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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MENDKGQLVELYVPRKCSATNRIIKAKDHSSVQINIAQVDEEGRAIPGEYVTYALSGYIRARGEADDSLNRLAQQDGLLK
NVWSYSR

The query sequence (length=87) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8bqd:a 87 87 0.9080 0.9080 0.9080 5.38e-57 8bn3:D1, 8bqx:a, 8c83:a, 8cah:a, 8ccs:x, 8cf5:x, 8cku:x, 8cmj:x, 5dat:d1, 5dge:d1, 5dgv:d1, 6eml:a, 8eub:BV, 8evp:BV, 8evq:BV, 8evr:BV, 8evs:BV, 8evt:BV, 8ewb:BV, 8ewc:BV, 6fai:V, 6fyy:V, 6gq1:AL, 6gqv:AL, 6gsm:V, 6gsn:V, 8i7j:V, 5it7:V, 5it9:V, 3j77:21, 3j78:21, 3j80:V, 5juu:SB, 8k2d:SV, 8k82:SV, 5m1j:V2, 7mpi:BV, 7mpj:BV, 7n8b:BV, 5ndv:d1, 7nrd:Sa, 5obm:d1, 7osa:eS21, 7osm:eS21, 6q8y:a, 6rbd:V, 6rbe:V, 8rw1:V, 6s47:BW, 8s8d:V, 8s8e:V, 8s8f:V, 8s8i:V, 6snt:V, 6sv4:a, 6t4q:SV, 6t7t:SV, 6tnu:a, 4u3n:D1, 4u4n:D1, 4u4o:D1, 4u4y:D1, 4u50:d1, 4u53:D1, 4v6i:AT, 4v8y:AV, 4v8z:AV, 4v92:BV, 6xiq:AL, 6xir:AL, 6z6j:SV, 6z6k:SV, 7zrs:AV, 7zux:DV
2 8c3a:X 87 87 0.8966 0.8966 0.8966 3.98e-55 8c3a:DI, 8cq7:X, 8cq7:DI, 8cqw:X, 8cqw:DI, 8cre:X, 8cre:DI, 8oeq:X, 8oeq:DI, 7pzy:W, 7q08:W, 7q0f:W, 7q0p:W, 7q0r:W, 8q5i:W
3 4v3p:ST 82 75 0.5632 0.5976 0.6533 8.77e-32
4 8auv:G 83 75 0.4943 0.5181 0.5733 1.51e-31 8b2l:G1
5 8r6f:V 81 75 0.5517 0.5926 0.6400 2.34e-30 8ip8:cb, 8ip9:cb, 8ipa:cb
6 7syl:W 83 79 0.5172 0.5422 0.5696 2.67e-30 6gz3:BV, 6olz:BV, 6om0:SV, 6om7:SV, 7oyb:V2, 7tor:AS21, 7wtw:V, 7wtz:V
7 5xxu:V 80 79 0.5402 0.5875 0.5949 4.95e-30
8 7qix:L 82 75 0.4828 0.5122 0.5600 3.93e-29 7qiz:BA
9 6xu8:AV 82 80 0.5402 0.5732 0.5875 6.29e-28
10 6az1:Y 88 80 0.4023 0.3977 0.4375 2.98e-21 8rxh:SY, 8rxx:SY
11 8ova:AR 89 78 0.4253 0.4157 0.4744 3.16e-21
12 7ase:g 83 78 0.4023 0.4217 0.4487 1.17e-20
13 3j7a:Z 72 69 0.4023 0.4861 0.5072 8.61e-20 3jbn:Z, 3jbp:Z, 6okk:Z, 8tpu:SZ
14 4bts:AZ 97 76 0.3678 0.3299 0.4211 7.46e-15 4bts:BZ, 4bts:CZ, 4bts:DZ, 4v5o:AZ, 4v5o:BZ
15 7t5a:A 230 68 0.2184 0.0826 0.2794 0.14 7t50:A, 7t50:B, 7t51:A, 7t51:B, 7t5a:B
16 1ea0:A 1452 60 0.2414 0.0145 0.3500 0.37 1ea0:B
17 6s6t:A 1472 60 0.2414 0.0143 0.3500 0.40 6s6s:A, 6s6s:B, 6s6s:C, 6s6s:D, 6s6t:B, 6s6t:C, 6s6t:D, 6s6u:A, 6s6u:B, 6s6u:C, 6s6u:D, 6s6u:E, 6s6u:F, 6s6x:A, 6s6x:B, 6s6x:C, 6s6x:D, 6s6x:E, 6s6x:F, 2vdc:A, 2vdc:B, 2vdc:C, 2vdc:D, 2vdc:E, 2vdc:F
18 1md9:A 536 47 0.1954 0.0317 0.3617 0.47 1mdb:A
19 4obv:C 471 44 0.1494 0.0276 0.2955 0.96 4obu:E, 4obu:A, 4obu:U, 4obu:G, 4obu:H, 4obu:F, 4obu:B, 4obu:C, 4obv:D, 4obv:B, 4obv:A
20 6idy:A 421 59 0.2299 0.0475 0.3390 1.3 6idy:B, 6idy:C
21 5xxz:B 1310 20 0.1149 0.0076 0.5000 3.6
22 6vjb:A 1346 20 0.1149 0.0074 0.5000 3.6
23 5xya:A 1358 20 0.1149 0.0074 0.5000 3.6 5xxz:A
24 7edd:A 1394 20 0.1149 0.0072 0.5000 3.7 5xyr:A
25 3rg2:C 613 43 0.1494 0.0212 0.3023 4.3 6iyk:A, 6iyk:B, 6iyl:A, 6iyl:B, 4iz6:A, 4iz6:B, 8k5s:A, 8k5s:B, 8k5t:A, 8k5t:B, 3rg2:A, 3rg2:B, 3rg2:H, 3rg2:D, 3rg2:E, 3rg2:F, 3rg2:I, 3rg2:G, 3rg2:J
26 3b4y:A 332 40 0.1494 0.0392 0.3250 5.7 3b4y:B
27 5f5b:A 182 16 0.1149 0.0549 0.6250 6.8 8ab5:A, 8ab5:B, 5f5g:A, 5f5j:A, 5f5k:A, 4h1d:A, 5mt6:A, 5mt7:A, 5mt8:A, 5mtf:A, 6pj4:A, 6pj5:A, 6pj7:A, 6pj8:A, 6pj9:A, 6pja:A, 6pjp:A, 6pjq:A, 6pjr:A, 6pju:A, 4qnz:A, 4qo0:A, 4qo2:A, 3txt:A, 3ubb:A, 6vj8:A, 6vj9:A, 2xow:A, 6xro:A, 6xrp:A, 3zeb:A, 3zmh:A, 3zmi:A, 3zmj:A, 3zot:A
28 3a9g:A 338 34 0.1724 0.0444 0.4412 8.7 3a9h:A
29 1l8q:A 321 41 0.1839 0.0498 0.3902 8.9 2hcb:A, 2hcb:B, 2hcb:C, 2hcb:D, 3r8f:A, 3r8f:B, 3r8f:C, 3r8f:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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