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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MENDKGQLVELYVPRKCSATNRIIKAKDHASVQISIAKVDEDGRAIAGENITYALSGYVRGRGEADDSLNRLAQQDGLLK
NVWSYSR

The query sequence (length=87) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8c3a:X 87 87 1.0000 1.0000 1.0000 1.96e-60 8c3a:DI, 8cq7:X, 8cq7:DI, 8cqw:X, 8cqw:DI, 8cre:X, 8cre:DI, 8oeq:X, 8oeq:DI, 7pzy:W, 7q08:W, 7q0f:W, 7q0p:W, 7q0r:W, 8q5i:W
2 8bqd:a 87 87 0.8851 0.8851 0.8851 8.62e-54 8bn3:D1, 8bqx:a, 8c83:a, 8cah:a, 8ccs:x, 8cf5:x, 8cku:x, 8cmj:x, 5dat:d1, 5dge:d1, 5dgv:d1, 6eml:a, 8eub:BV, 8evp:BV, 8evq:BV, 8evr:BV, 8evs:BV, 8evt:BV, 8ewb:BV, 8ewc:BV, 6fai:V, 6fyy:V, 6gq1:AL, 6gqv:AL, 6gsm:V, 6gsn:V, 8i7j:V, 5it7:V, 5it9:V, 3j77:21, 3j78:21, 3j80:V, 5juu:SB, 8k2d:SV, 8k82:SV, 5m1j:V2, 7mpi:BV, 7mpj:BV, 7n8b:BV, 5ndv:d1, 7nrd:Sa, 5obm:d1, 7osa:eS21, 7osm:eS21, 6q8y:a, 6rbd:V, 6rbe:V, 8rw1:V, 6s47:BW, 8s8d:V, 8s8e:V, 8s8f:V, 8s8i:V, 6snt:V, 6sv4:a, 6t4q:SV, 6t7t:SV, 6tnu:a, 4u3n:D1, 4u4n:D1, 4u4o:D1, 4u4y:D1, 4u50:d1, 4u53:D1, 4v6i:AT, 4v8y:AV, 4v8z:AV, 4v92:BV, 6xiq:AL, 6xir:AL, 6z6j:SV, 6z6k:SV, 7zrs:AV, 7zux:DV
3 4v3p:ST 82 75 0.5402 0.5732 0.6267 2.71e-29
4 8r6f:V 81 75 0.5517 0.5926 0.6400 2.55e-28 8ip8:cb, 8ip9:cb, 8ipa:cb
5 7syl:W 83 79 0.5057 0.5301 0.5570 8.99e-28 6gz3:BV, 6olz:BV, 6om0:SV, 6om7:SV, 7oyb:V2, 7tor:AS21, 7wtw:V, 7wtz:V
6 8auv:G 83 75 0.4598 0.4819 0.5333 1.98e-27 8b2l:G1
7 5xxu:V 80 79 0.5172 0.5625 0.5696 3.15e-27
8 6xu8:AV 82 80 0.5287 0.5610 0.5750 7.91e-27
9 7qix:L 82 75 0.4598 0.4878 0.5333 1.20e-26 7qiz:BA
10 6az1:Y 88 80 0.4253 0.4205 0.4625 2.14e-22 8rxh:SY, 8rxx:SY
11 8ova:AR 89 78 0.4138 0.4045 0.4615 5.46e-21
12 7ase:g 83 78 0.3908 0.4096 0.4359 1.03e-20
13 3j7a:Z 72 69 0.4023 0.4861 0.5072 1.66e-19 3jbn:Z, 3jbp:Z, 6okk:Z, 8tpu:SZ
14 4bts:AZ 97 76 0.3678 0.3299 0.4211 5.75e-15 4bts:BZ, 4bts:CZ, 4bts:DZ, 4v5o:AZ, 4v5o:BZ
15 3ild:A 148 48 0.1494 0.0878 0.2708 2.5
16 5xxz:B 1310 20 0.1264 0.0084 0.5500 3.5
17 6vjb:A 1346 20 0.1264 0.0082 0.5500 3.5
18 5xya:A 1358 20 0.1264 0.0081 0.5500 3.5 5xxz:A
19 7edd:A 1394 20 0.1264 0.0079 0.5500 3.6 5xyr:A
20 6am0:A 260 47 0.1724 0.0577 0.3191 4.2 6am0:E, 5lop:A
21 6qw6:S 126 64 0.1954 0.1349 0.2656 4.4 8h6e:4S, 8h6j:4S, 8qp8:S, 8qp9:S, 8qpk:S, 6qx9:S, 8qxd:S, 8r08:S
22 1md9:A 536 47 0.1724 0.0280 0.3191 4.5 1mdb:A
23 8uxw:A 400 57 0.1954 0.0425 0.2982 4.6 8e9b:A, 8uxx:A, 6w17:A
24 5jca:L 471 32 0.1609 0.0297 0.4375 5.2 5jfc:L
25 5vj7:A 462 32 0.1609 0.0303 0.4375 6.3
26 8r0a:S 86 62 0.1954 0.1977 0.2742 9.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417