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BioLiP
>protein
MELRHLRYFVAVVEEQSFTKAADKLCIAQPPLSRQIQNLEEELGIQLLERGSRPVKTTPEGHFFYQYAIKLLSNVDQMVS
MTKRIASGHH

The query sequence (length=90) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4ihs:B 93 90 1.0000 0.9677 1.0000 3.74e-64 4ihs:A, 4ihs:C, 4ihs:D, 4iht:A, 4iht:B, 4iht:C, 4iht:D
2 7d98:Q 288 88 0.3889 0.1215 0.3977 6.21e-14 7d98:A, 7d98:B, 7d98:P, 5xxp:A, 5xxp:B
3 6g4r:B 322 81 0.3667 0.1025 0.4074 2.40e-12 6g1b:J, 6g4r:E
4 9f14:A 324 83 0.3556 0.0988 0.3855 2.49e-10 9f14:B, 9fdd:A, 9fdd:B, 9fdd:C, 9fdd:D, 9fdd:E, 9fdd:F, 9fdd:G, 9fdd:H, 4lq2:A, 4lq5:A, 4m4g:A
5 8y6u:H 92 63 0.2778 0.2717 0.3968 2.02e-09 8y6u:J
6 8h3v:S 304 50 0.2667 0.0789 0.4800 2.80e-08 8h3v:T, 8h3v:U, 8h3v:V
7 5y2v:A 304 59 0.2444 0.0724 0.3729 1.13e-05 5y2v:B, 5y2v:C, 5y2v:D, 5y2w:A
8 3fxr:A 296 68 0.2889 0.0878 0.3824 1.15e-05 3fxu:A, 3fxu:B, 3n6u:A
9 6hg8:B 482 45 0.1889 0.0353 0.3778 0.60 2f5z:A, 2f5z:B, 2f5z:C, 2f5z:D, 2f5z:E, 2f5z:F, 2f5z:G, 2f5z:H, 2f5z:I, 2f5z:J, 6hg8:A, 6i4p:A, 6i4p:B, 6i4q:A, 6i4q:B, 6i4r:A, 6i4r:B, 6i4s:A, 6i4s:B, 6i4t:A, 6i4t:B, 6i4u:A, 6i4u:B, 6i4z:A, 6i4z:B, 6i4z:C, 6i4z:D, 6i4z:E, 6i4z:F, 6i4z:G, 6i4z:H, 5j5z:A, 5j5z:B, 5nhg:A, 5nhg:B, 5nhg:C, 5nhg:D, 5nhg:E, 5nhg:F, 5nhg:G, 5nhg:H, 7psc:A, 7psc:B, 3rnm:A, 3rnm:B, 3rnm:C, 3rnm:D, 1zmc:A, 1zmc:B, 1zmc:C, 1zmc:D, 1zmc:E, 1zmc:F, 1zmc:G, 1zmc:H, 1zmd:A, 1zmd:B, 1zmd:C, 1zmd:D, 1zmd:E, 1zmd:F, 1zmd:G, 1zmd:H, 1zy8:A, 1zy8:B, 1zy8:C, 1zy8:D, 1zy8:E, 1zy8:F, 1zy8:G, 1zy8:H, 1zy8:I, 1zy8:J, 7zyt:A, 7zyt:B
10 3odt:B 296 32 0.1556 0.0473 0.4375 4.2 3odt:A
11 3j3v:U 103 32 0.1111 0.0971 0.3125 5.2 7aqc:U, 7aqd:U, 7as8:Y, 7as9:Y, 8buu:U, 6ha1:U, 6ha8:U, 6htq:U, 3j3w:U, 3j9w:BX, 5njt:n, 7o5b:t, 7ope:Y, 6ppf:U, 6ppk:U, 8qcq:U, 7qgu:U, 7qh4:U, 8qpp:t, 7qv1:U, 7qv2:U, 7qv3:U, 8r55:t, 8s1p:U, 8s1u:U, 7s9u:U, 7sae:U, 6tnn:n, 6tpq:n
12 6zxv:A 325 48 0.1667 0.0462 0.3125 6.2 6zxv:B, 6zxw:G
13 8rve:i 246 29 0.1111 0.0407 0.3448 7.0 8rve:j

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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