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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MEILNEEKKSKVHYHVAAIINYLGHCISLVALLVAFVLFLRARSIRCLRNIIHANLIAAFILRNATWFVVQLTMSPEVHQ
SNVGWCRLVTAAYNYFHVTNFFWMFGEGCYLHTAIVLTDRLRAWMFICIGWGVPFPIIVAWAIGKLYYDNEKCWAGKRPG
VYTDYIYQGPMALVLLINFIFLFNIVRILMTKLRASTTSETIQARKAVKATLVLLPLLGITYMLAFVNPGEDEVSRVVFI
YFNAFLESFQGFFVSVFACFLNS

The query sequence (length=263) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6pb0:R 281 263 0.9468 0.8861 0.9468 0.0 8gtg:A, 8gti:A, 8gtm:A, 4k5y:C
2 6pb1:P 281 260 0.7072 0.6619 0.7154 1.07e-136
3 4z9g:A 421 147 0.5589 0.3492 1.0000 3.20e-103 4k5y:A, 4k5y:B, 4z9g:B, 4z9g:C
4 4z9g:A 421 111 0.4183 0.2613 0.9910 1.40e-73 4k5y:A, 4k5y:B, 4z9g:B, 4z9g:C
5 7tyn:R 373 261 0.3308 0.2332 0.3333 1.15e-39 9auc:R, 8f0j:R, 8f0k:R, 8f2b:R, 6niy:R, 7tyf:R, 7tyo:R, 7tyw:R, 7tyx:R, 7tyy:R, 7tzf:R
6 8e3y:R 372 267 0.3232 0.2285 0.3184 1.97e-39 8e3z:R, 6vn7:R
7 6nbh:R 379 275 0.3384 0.2348 0.3236 2.56e-39 8flt:R, 8ha0:R, 8haf:R, 8jr9:R, 6nbf:R, 6nbi:R
8 6wzg:R 379 272 0.3460 0.2401 0.3346 3.79e-38 7d3s:R, 6wi9:R
9 8e3x:R 362 265 0.3194 0.2320 0.3170 1.87e-36 6m1i:A, 6p9y:R
10 7vvo:R 302 250 0.3080 0.2682 0.3240 1.25e-35 8gw8:R
11 7vqx:R 361 270 0.3498 0.2548 0.3407 4.89e-35 7wbj:R
12 7cz5:R 269 267 0.3156 0.3086 0.3109 1.99e-33 7v9m:R
13 6wpw:R 398 240 0.3080 0.2035 0.3375 3.24e-33 8fu6:R, 8jiq:R, 8jit:R, 8jiu:R, 6lmk:R, 6lml:R, 7v35:R
14 7f16:R 376 249 0.3156 0.2207 0.3333 8.41e-33
15 7lci:R 393 266 0.3270 0.2188 0.3233 1.75e-32 7c2e:R, 7duq:R, 7e14:R, 7evm:R, 7fim:R, 8jip:R, 8jir:R, 8jis:R, 7lcj:R, 7lck:R, 5nx2:A, 6orv:RP, 7s15:R, 7s1m:R, 7vbh:R, 7vbi:R, 6vcb:R, 6x19:R, 6x1a:R, 7x8r:R, 7x8s:R, 6xox:R
16 8jrv:R 319 239 0.3042 0.2508 0.3347 4.01e-32
17 7dur:R 371 261 0.3194 0.2264 0.3218 6.40e-31 7lll:R, 7lly:R
18 6lpb:R 331 244 0.3194 0.2538 0.3443 2.68e-30
19 6whc:R 371 229 0.2966 0.2102 0.3406 8.57e-30 8jru:R, 8wg8:R
20 7fin:R 380 239 0.2852 0.1974 0.3138 1.72e-26 7dty:R, 7fiy:R, 7rbt:R, 7vab:R, 8yw4:R
21 7knu:R 341 247 0.3156 0.2434 0.3360 1.36e-24
22 6ln2:A 437 316 0.3232 0.1945 0.2690 5.77e-23 3c59:A, 3c5t:A, 3iol:A, 5otu:A, 5otu:C, 5otv:C, 5otv:A, 5otw:C, 5otw:A, 5otx:A, 5otx:C, 4zgm:A
23 6fj3:A 562 195 0.2243 0.1050 0.3026 3.07e-21 8d51:A, 8d52:A, 7uzo:A, 7uzp:A, 7uzp:C, 7uzp:E
24 6fj3:A 562 76 0.1217 0.0569 0.4211 2.46e-07 8d51:A, 8d52:A, 7uzo:A, 7uzp:A, 7uzp:C, 7uzp:E
25 5xez:B 499 142 0.2015 0.1062 0.3732 1.59e-20 5xf1:B
26 5xez:B 499 90 0.1027 0.0541 0.3000 1.66e-05 5xf1:B
27 5ee7:A 416 140 0.2091 0.1322 0.3929 2.24e-20
28 5ee7:A 416 78 0.1027 0.0649 0.3462 0.20
29 5yqz:R 558 142 0.2015 0.0950 0.3732 2.31e-20 5xez:A, 5xf1:A
30 5yqz:R 558 88 0.0989 0.0466 0.2955 1.44e-04 5xez:A, 5xf1:A
31 6kjv:B 424 139 0.1673 0.1038 0.3165 1.24e-14 6kjv:A, 6kk1:A, 6kk1:B, 6kk7:A, 6kk7:B, 5vew:A, 5vew:B, 5vex:A, 5vex:B
32 6kjv:B 424 97 0.1331 0.0825 0.3608 9.15e-09 6kjv:A, 6kk1:A, 6kk1:B, 6kk7:A, 6kk7:B, 5vew:A, 5vew:B, 5vex:A, 5vex:B
33 7xkd:R 261 193 0.1977 0.1992 0.2694 1.15e-07 7wui:R, 7xke:R, 7xkf:R
34 7d76:R 265 262 0.2586 0.2566 0.2595 2.43e-05 7d77:R
35 8g2y:R 251 172 0.1749 0.1833 0.2674 0.004
36 7wu4:R 286 272 0.2662 0.2448 0.2574 0.011 7wu3:R, 7wu5:R
37 4fcy:B 476 57 0.0684 0.0378 0.3158 0.79
38 5mo4:A 429 92 0.0913 0.0559 0.2609 4.8 3cs9:B, 3cs9:C, 2hz0:B, 6npe:B, 6npu:B, 6npv:B, 3pyy:B, 8ssn:A
39 8ssn:B 386 92 0.0875 0.0596 0.2500 5.0
40 4ueu:A 256 96 0.0798 0.0820 0.2188 7.1 4csv:A
41 5oql:S 237 95 0.0875 0.0970 0.2421 10.0 6rxt:CB, 6rxu:CB, 6rxv:CB, 6rxx:CB, 6rxy:CB, 6rxz:CB

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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