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BioLiP
>protein
MEHLYIVSYDIRNQRRWRRLFKTMHGFGCWLQLSVFQCRLDRIRIIKMEAAINEIVNHAEDHVLILDLGPAENVKPKVSS
IGKTFDPILRQAVIV

The query sequence (length=95) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7mi4:E 95 95 1.0000 1.0000 1.0000 4.34e-68 7mi4:F, 7mi5:E, 7mi5:F, 7mi9:E, 7mi9:F, 7mib:F, 7mib:E, 7mid:C, 7mid:D
2 7cr8:M 93 66 0.2421 0.2473 0.3485 9.86e-09 7cr6:E, 7cr6:F, 7cr8:N, 7cr8:U, 7cr8:V, 7cr8:e, 7cr8:f, 7cr8:m, 7cr8:n, 7cr8:u, 7cr8:v, 7cr8:E, 7cr8:F
3 6p55:B 327 27 0.1368 0.0398 0.4815 0.079 6p52:A, 6p53:B, 6p54:A, 6p54:B, 6p55:A, 6xqv:A, 6xqv:B
4 8veq:A 325 27 0.1263 0.0369 0.4444 0.25 6vbd:A, 8ven:A, 8vep:A
5 6m9g:A 280 40 0.1158 0.0393 0.2750 1.7 6eg7:A, 6eg7:B, 6m9g:B
6 7ook:C 373 31 0.1368 0.0349 0.4194 3.9 7ook:B, 7ook:A
7 2j0f:A 446 73 0.2105 0.0448 0.2740 4.8 2j0f:B, 2j0f:C, 1uou:A, 2wk6:A, 2wk6:B
8 1v26:B 510 30 0.1474 0.0275 0.4667 5.1 1v25:A, 1v25:B, 1v26:A
9 4cej:A 1177 40 0.1368 0.0110 0.3250 6.4 4ceh:A, 4cei:A
10 7s6u:A 351 63 0.1895 0.0513 0.2857 8.6 7s6v:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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