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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MEFIKGFTFGWDSQKGYFKTERAKESLRLMQERTASEYVIVALAALQDTAHSTEVDFQGSHMVDDDELIELIDYAKSLGL
KVILKPTVNCRNGTWRAHINFFDMDIPGEPTWDEWFESYINYQKHYAKIAEKTNCEMFVVGCEMVQAERREDKWRELIAE
VRKDYRGLVTYNTDKYQEDNVKFWDALDVISSSGYYPINDWDRQLDRIEAVVKQYDKPFFFVAAGCPSRSGSALLPNKWD
LEGAINLQEQADYYQVMFEKTASRSWVGGFGLWDWQTYLYDEKDATKNDDYGVFGKPAERVIKAYYQSR

The query sequence (length=309) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5yli:B 309 309 1.0000 1.0000 1.0000 0.0 5yli:A, 5ylk:B, 5ylk:A, 5yll:B, 5yll:A, 5z4t:B, 5z4t:A
2 7dwa:B 327 311 0.5210 0.4924 0.5177 6.43e-113 7dvj:B, 7dvj:A, 7dw8:A, 7dw8:B, 7dwa:A
3 4cd6:A 315 308 0.4272 0.4190 0.4286 4.49e-93 4cd7:A, 4cd7:B, 4cd8:A
4 7lcc:A 1369 62 0.0647 0.0146 0.3226 0.30
5 4imr:A 258 35 0.0421 0.0504 0.3714 2.8 4imr:B
6 3bww:A 253 94 0.0874 0.1067 0.2872 3.8
7 5yif:A 459 49 0.0518 0.0349 0.3265 6.6 5yif:B
8 1hyh:A 297 45 0.0485 0.0505 0.3333 8.9 1hyh:B, 1hyh:C, 1hyh:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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