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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MEELRVYIVRYSEIGLKGKNRKDFEEALRRNIERVTGMKVKRQWGRFLIPIDENVTLDDKLKKIFGIQNFSKGFLVSHDF
EEVKKYSLIAVKEKLEKGNYRTFKVQAKKAYKEYKKGVYEINSELGALILKNFKELSVDVRNPDFVLGVEVRPEGVLIFT
DRVECYGGLPVGTGGKAVLLLSGGIDSPVAGWYALKRGVLIESVTFVSPPFTSEGAVEKVRDILRVLREFSGGHPLRLHI
VNLTKLQLEVKKRVPDKYSLIMYRRSMFRIAEKIAEETGAVAFYTGENIGQVASQTLENLWSIESVTTRPVIRPLSGFDK
TEIVEKAKEIGTYEISIKPYQDSCVFFAPKNPATRSHPSILEKLEQQVPDLPVLEEEAFTSRKVEVIE

The query sequence (length=388) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4kr6:B 388 388 1.0000 1.0000 1.0000 0.0 4kr6:A, 4kr7:A, 4kr7:B, 4kr9:A, 4kr9:B
2 2c5s:A 372 340 0.3737 0.3898 0.4265 9.59e-82
3 8psn:B 515 182 0.1057 0.0796 0.2253 0.97 8pso:B, 8psq:B, 8pss:B, 8psu:B, 8psx:B, 8psz:B, 8pt2:B, 8pt6:B, 8pt7:B, 8pth:B, 8ptj:B, 8qz8:B
4 6erp:A 1011 91 0.0696 0.0267 0.2967 1.8 6erp:B, 6erq:A, 6erq:B
5 3spa:A 941 91 0.0696 0.0287 0.2967 1.8 7a8p:A
6 9bdc:E 990 91 0.0696 0.0273 0.2967 1.9 9bdd:E, 4boc:A, 5ola:E, 5ola:F, 8u8u:E, 8u8v:E
7 8fgw:C 1342 80 0.0490 0.0142 0.2375 2.1 8fh3:C
8 5bv9:A 701 44 0.0387 0.0214 0.3409 3.0 5cvy:A, 5vma:A
9 1yt8:A 525 71 0.0490 0.0362 0.2676 4.0
10 3bl5:E 199 31 0.0361 0.0704 0.4516 5.7 3bl5:A, 3bl5:B, 3bl5:C, 3bl5:D, 3bl5:F
11 2det:A 365 32 0.0284 0.0301 0.3438 6.8 2der:A, 2der:B, 2deu:A, 2deu:B
12 3d6e:B 186 56 0.0361 0.0753 0.2500 7.1 3d6e:A
13 2v1u:A 382 44 0.0309 0.0314 0.2727 7.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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