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BioLiP
>protein
MEAQPQVISATGVVKGIDLESKKITIHHDPIAAVNWPEMTMRFTITPQTKMSEIKTGDKVAFNFVQQGNLSLLQDIKVSQ

The query sequence (length=80) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3e6z:X 80 80 0.9875 0.9875 0.9875 6.29e-54 2qcp:X, 2vb2:X
2 8c2q:A 100 76 0.5375 0.4300 0.5658 2.81e-25 8bbz:CCC
3 8bwv:B 80 77 0.5250 0.5250 0.5455 2.30e-23 8bwv:A, 8bwv:C, 8bwv:D, 8bwv:E, 8bwv:F
4 3odh:A 194 73 0.2375 0.0979 0.2603 0.29 3odh:B, 3odh:E, 3odh:F
5 6mg0:B 1687 41 0.1875 0.0089 0.3659 0.54
6 6mfz:A 1789 41 0.1875 0.0084 0.3659 0.61 5es7:A, 5es8:A, 5es8:B, 5es9:A, 6mfw:A, 6mfx:A, 6mfy:A, 6mg0:A, 6ulz:A
7 8fmw:AI 148 27 0.1250 0.0676 0.3704 1.4 8fn2:I
8 8ayh:B 951 26 0.1500 0.0126 0.4615 2.8 3frp:A, 3hrz:A, 3hs0:A, 3hs0:F
9 2g42:B 78 32 0.1250 0.1282 0.3125 6.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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