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BioLiP
>protein
MDYFRLAEKFLREMHAKYMKRVSRPGNTPRPWFDFSEERLLSRLFEEMDELREAVEKEDWENLRDELLDVANFCMYLWGK
LSVK

The query sequence (length=84) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2p06:B 88 83 0.9881 0.9432 1.0000 6.73e-57 2p06:A
2 2yxh:A 114 41 0.2143 0.1579 0.4390 0.090 2yxh:B
3 5zvw:A 335 60 0.2500 0.0627 0.3500 2.5
4 8dwe:A 355 46 0.1548 0.0366 0.2826 3.9 8dvp:A, 8dvy:A, 8dw0:A, 8dw4:A, 8dw7:A, 8dw7:D, 8dwd:A, 8dwe:D, 8dwf:A, 8dwf:D, 3g0q:A, 5kn8:A, 5kn9:A, 6q0c:A, 1rrq:A, 1rrs:A, 6u7t:A, 1vrl:A, 4yoq:A, 4yph:A, 4ypr:A, 4ypr:B
5 6gov:B 139 55 0.1786 0.1079 0.2727 3.9 5lm7:B, 5lm7:D, 5ms0:L, 6tqn:B, 6tqo:B
6 8z9x:B 567 47 0.1786 0.0265 0.3191 4.0 8z9x:A
7 4mag:A 307 42 0.1429 0.0391 0.2857 5.1 7a5q:A, 7a5q:B
8 4eue:A 398 31 0.1310 0.0276 0.3548 6.4 4euf:A
9 3rwl:A 404 46 0.1667 0.0347 0.3043 6.5
10 3sxj:A 245 44 0.1667 0.0571 0.3182 7.1 3sxj:B, 3t0i:A, 3t0i:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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