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BioLiP
>protein
MDWRHKAVCRDEDPELFFPVGNSGPALAQIADAKLVCNRCPVTTECLSWALNTGQDSGVWGGMSEDERRALKRRNA

The query sequence (length=76) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5oay:A 76 76 1.0000 1.0000 1.0000 1.81e-53 6ono:A, 6ono:C, 6onu:A, 6onu:C, 6onu:E, 6onu:G
2 8dy7:H 85 74 0.4079 0.3647 0.4189 1.26e-15 8dy9:H
3 8cwr:A 85 72 0.4342 0.3882 0.4583 1.46e-13 8cwt:A, 8cwt:C, 8cwt:E, 8cyf:A
4 7kim:Z 80 59 0.2763 0.2625 0.3559 2.42e-05 7kif:Z, 7kuf:A, 7kug:A, 7kug:C
5 8ssl:A 1072 25 0.1316 0.0093 0.4000 2.0 5cjt:A, 5cjt:B, 5cju:A, 5cju:B, 5cjv:A, 5cjv:B, 5cjw:A, 5cjw:B, 8ssl:B, 8ssl:C, 4xc6:A, 4xc6:B, 4xc7:A, 4xc8:A, 4xc8:B
6 2bvf:A 453 51 0.1711 0.0287 0.2549 2.5 2bvf:B, 2bvg:A, 2bvg:B, 2bvg:C, 2bvg:D, 2bvh:A, 2bvh:B, 2bvh:C, 2bvh:D
7 4hr3:A 407 47 0.1842 0.0344 0.2979 6.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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