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BioLiP
>protein
MDVVDSLLVNGSNITPPCELGLENETLFCLDQPRPSKEWQPAQVILL

The query sequence (length=47) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1d6g:A 47 47 1.0000 1.0000 1.0000 2.46e-29
2 5hpj:A 217 35 0.2553 0.0553 0.3429 2.5
3 1aj8:A 371 39 0.2979 0.0377 0.3590 3.9 1aj8:B
4 6qkg:B 664 17 0.1702 0.0120 0.4706 4.2 6qkg:A, 6qkr:A, 6qkr:B, 6qkx:A
5 7eu0:M 1052 23 0.1915 0.0086 0.3913 5.6
6 7eu1:M 1055 23 0.1915 0.0085 0.3913 5.6
7 5gxx:A 600 33 0.2128 0.0167 0.3030 6.3 5gxx:B, 5gxy:A, 5gxy:B, 5gxz:A, 5gxz:B, 5gy0:A, 5gy0:B, 5gy1:A, 5gy1:B
8 6fci:A 179 30 0.2766 0.0726 0.4333 7.5 6fch:A, 6fch:B, 6fci:D, 6fci:B, 6fci:C, 6fcl:A, 6fcl:B, 6fd4:B, 6fd4:A, 6fd5:A, 6fd5:B, 6fd6:A, 6fd6:B, 6hgp:A, 6hgq:A, 6hgq:C, 6hgq:D, 6hgq:B, 6hgr:A, 6hgr:B, 6hgs:A, 6hgs:B, 1ore:A, 4x44:A, 4x45:B, 1zn7:A, 1zn7:B, 1zn8:A, 1zn8:B, 1zn9:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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