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BioLiP
>protein
MDSRLQRIHAEIKNSLKIDNLDVNRCIEALDELASLQVTMQQAQKHTEMITTLKKIRRFKVSQVIMEKSTMLYNKFKNM

The query sequence (length=79) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2msr:B 88 79 1.0000 0.8977 1.0000 9.34e-54 2n3a:B, 3u88:C
2 5ksz:A 398 36 0.1899 0.0377 0.4167 0.60 5kso:A, 5ksp:A, 5ksp:B, 5ksy:A, 5kty:A, 5ku1:A
3 8jfh:E 79 54 0.2152 0.2152 0.3148 0.64 8jfn:B
4 4kpp:A 395 36 0.1519 0.0304 0.3333 1.3 4kpp:B
5 6cj6:D 166 58 0.1899 0.0904 0.2586 2.3 6cj6:A, 6cj6:B, 6cj6:C
6 4ct9:A 394 41 0.1772 0.0355 0.3415 3.2 4cta:A, 4cta:B, 4uoc:A, 4uoc:B, 4uuw:A, 4uux:A, 4uux:B
7 8dgp:A 236 39 0.1392 0.0466 0.2821 3.9 2br9:A, 7c8e:A, 7c8e:B, 8dgm:A, 8dgn:A, 8dgp:B, 8dgp:C, 8dgp:D, 8dp5:D, 6eih:A, 8q1s:B, 8q1s:A, 3ual:A, 3ubw:A, 7v9b:A
8 4py5:A 267 55 0.2025 0.0599 0.2909 5.9
9 3pr3:A 578 42 0.1392 0.0190 0.2619 6.3 3pr3:B
10 6or5:A 2058 56 0.2152 0.0083 0.3036 6.3
11 3jyf:A 336 21 0.1266 0.0298 0.4762 6.8 3jyf:B
12 2poc:B 352 50 0.2025 0.0455 0.3200 8.9 2poc:A, 2poc:C, 2poc:D, 2put:A, 2put:B, 2put:C, 2put:D, 2puv:A, 2puv:B, 2puv:C, 2puv:D, 2puw:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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