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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MDPSMGVNSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDMGFDAVIHNPD

The query sequence (length=79) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1kvj:A 79 79 1.0000 1.0000 1.0000 2.65e-55 3cjk:B, 2k1r:A, 5t7l:B
2 6a71:B 71 62 0.3924 0.4366 0.5000 4.68e-19 6a72:A
3 1s6u:A 76 68 0.4051 0.4211 0.4706 8.13e-18
4 1y3j:A 77 67 0.3418 0.3506 0.4030 2.78e-11
5 1yjt:A 75 68 0.3165 0.3333 0.3676 4.67e-11 1yjv:A
6 1k0v:A 73 62 0.2785 0.3014 0.3548 9.99e-11 3i9z:A, 2qif:A, 2qif:B
7 8ioy:A 816 74 0.2911 0.0282 0.3108 1.74e-10
8 1kqk:A 80 60 0.2658 0.2625 0.3500 2.63e-10
9 1afj:A 72 72 0.2658 0.2917 0.2917 3.65e-10
10 1oq6:A 76 68 0.2785 0.2895 0.3235 2.11e-09
11 1fvs:A 72 66 0.3038 0.3333 0.3636 8.03e-09 2ggp:B
12 4a48:B 69 68 0.2785 0.3188 0.3235 1.46e-08 4a48:A, 4a4j:A, 2xmw:A
13 6ff2:A 67 63 0.2532 0.2985 0.3175 1.95e-08 6ff2:B
14 3dxs:X 74 66 0.3038 0.3243 0.3636 7.07e-08
15 7si6:A 873 66 0.2658 0.0241 0.3182 9.78e-08 7si3:A, 7si7:A
16 7si6:A 873 62 0.2532 0.0229 0.3226 7.14e-07 7si3:A, 7si7:A
17 8q74:A 783 77 0.2405 0.0243 0.2468 2.87e-04 8q75:A, 8q76:A
18 2kkh:A 95 60 0.1899 0.1579 0.2500 0.10
19 1mwz:A 73 54 0.1772 0.1918 0.2593 0.25
20 4v3p:SC 195 39 0.1266 0.0513 0.2564 0.39 8ip8:eb, 8ip9:eb, 8ipa:eb, 8ipb:eb, 8jiw:BJ, 8r6f:J, 4v7e:BJ
21 7qix:Q 184 38 0.0886 0.0380 0.1842 0.72 8auv:b, 8b2l:b1, 7qiz:GA
22 6om8:D 468 31 0.1392 0.0235 0.3548 1.9 6om8:A, 6om8:B, 6om8:C, 6om8:E, 6om8:F, 6om8:G, 6om8:H, 6om8:I, 6om8:J, 6om8:K, 6om8:L
23 6okp:K 133 51 0.2532 0.1504 0.3922 1.9 7ugo:N, 7ugp:M, 7ugp:N
24 2h6b:A 239 39 0.1519 0.0502 0.3077 2.4 3e5u:C, 3e5u:D, 3e5u:A, 3e5u:B, 3e5x:A, 3e5x:B, 3e5x:C, 3e5x:D, 3e6b:A, 3e6b:B, 3e6c:C, 2h6b:B
25 2aly:B 785 21 0.1013 0.0102 0.3810 4.6 2amc:B, 1eiy:B, 3hfz:B, 2iy5:B, 1jjc:B, 3teh:B, 4tva:B
26 4r0v:A 419 36 0.1646 0.0310 0.3611 5.0 6gl6:A, 6gm5:A, 6gm6:A, 6gm7:A, 3lx4:A, 3lx4:B, 2n0s:A, 4r0v:B
27 3ojf:A 257 18 0.1013 0.0311 0.4444 6.4 3ojf:D, 3ojf:B, 3ojf:C, 2qio:A, 2qio:B, 2qio:C, 2qio:D, 5ycr:A, 5ycr:B, 5ycr:C, 5ycr:D, 5ycs:A, 5ycs:B, 5ycs:C, 5ycs:D
28 5ft8:A 401 46 0.1772 0.0349 0.3043 8.3 5ft4:A, 5ft4:B, 5ft5:A, 5ft5:B, 5ft6:A, 5ft6:B, 5ft8:C, 5ft8:E, 5ft8:G, 5ft8:I, 5ft8:K, 5ft8:M, 5ft8:O, 4lw2:A, 4lw2:B, 4lw2:C, 4lw4:A, 4lw4:B
29 6bbw:A 280 38 0.1519 0.0429 0.3158 9.4 6bbw:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417