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BioLiP
>protein
MDPNCSCSTGGSCTCTSSCACKNCKCTSCK

The query sequence (length=30) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1dft:A 30 30 1.0000 1.0000 1.0000 3.11e-13
2 4mt2:A 61 24 0.5667 0.2787 0.7083 4.79e-04
3 8suf:C 939 25 0.3667 0.0117 0.4400 0.076
4 8kgw:A 532 17 0.3667 0.0207 0.6471 2.2
5 7fd2:B 419 26 0.3000 0.0215 0.3462 4.8 7fd2:F, 7fd2:J, 7fd2:N, 7vga:B, 7vga:E, 7vga:H, 7vga:K, 7wco:K

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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