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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MDLNFIQVILVIFVAFLAGVEGILDQFHFHQPVIACTLIGLVTGNLLPCLILGGTLQMIALGWANVGAAVAPDAALASIA
SAIILVLGGQGKAGVTSAIAIAVPLAVAGLLLTIIVRTLATGIVHIMDAAAKEGNFRKIEMWQYIAIIMQGVRIAIPAGL
ILAIGAGPVKEMLTAMPVWLTDGLAIGGGMVVAVGYAMVINMMATKEVWPFFAIGFVLATISQLTLIGLGAIGISLALIY
LALSKQG

The query sequence (length=247) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7xtg:D 248 246 0.9960 0.9919 1.0000 1.41e-170 7xno:Y, 7xno:D, 7xno:H, 7xtg:H, 7xtg:Y
2 7vlx:Y 247 245 0.7368 0.7368 0.7429 6.94e-116 7vlx:A, 7vlx:C, 7vly:Y, 7vly:C, 7vly:F
3 8hfs:Y 249 237 0.5628 0.5582 0.5865 3.64e-71
4 7dyr:Y 248 247 0.4899 0.4879 0.4899 1.65e-60 7dyr:B, 7dyr:E, 6k1h:Y, 6k1h:E, 6k1h:B
5 3t9q:B 227 85 0.1053 0.1145 0.3059 1.9 3t91:A, 3t91:B, 3t9q:A
6 4bbj:A 664 32 0.0567 0.0211 0.4375 2.1 4bev:A, 4byg:A, 3rfu:A, 3rfu:B, 3rfu:C, 3rfu:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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