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BioLiP
>protein
MDLAPQMLRELQETNAALQDVRELLRQQVKEITFLKNTVMECDACG

The query sequence (length=46) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1fbm:A 46 46 1.0000 1.0000 1.0000 2.79e-28 1fbm:B, 1fbm:D, 1fbm:E, 1mz9:A, 1mz9:B, 1mz9:C, 1mz9:D, 1mz9:E
2 3wfw:A 138 30 0.2826 0.0942 0.4333 1.1 3wfx:A, 3wfx:B
3 3zs7:A 277 24 0.2174 0.0361 0.4167 1.9
4 6zu5:LPP 81 22 0.1957 0.1111 0.4091 2.8
5 1o7d:A 291 16 0.2174 0.0344 0.6250 3.3
6 7zm7:P 122 26 0.2174 0.0820 0.3846 3.8 7zmb:P, 7zmg:P
7 6k0w:A 528 20 0.1739 0.0152 0.4000 4.9
8 8wpk:B 437 19 0.1957 0.0206 0.4737 5.5 8wpf:B, 8wpp:B
9 7oik:A 4426 27 0.2391 0.0025 0.4074 6.0 7oim:A, 6tax:A, 6tay:A
10 7o3e:L 445 15 0.1739 0.0180 0.5333 6.4
11 5f6c:A 512 30 0.2391 0.0215 0.3667 6.8 8b0j:L, 2bx2:L, 2c4r:L, 5f6c:B, 6g63:A, 6g63:G, 6g63:L, 6g63:N, 2vmk:A, 2vmk:B, 2vrt:D, 2vrt:C
12 4me3:A 246 39 0.2391 0.0447 0.2821 7.3
13 8iao:Aa 412 15 0.1739 0.0194 0.5333 7.7 8iar:Aa, 8ibd:AA, 8ibd:Aa, 8ibg:AA, 8ibg:Aa
14 2c0b:L 488 30 0.2391 0.0225 0.3667 7.8 2vmk:C, 2vrt:A, 2vrt:B
15 1yaa:A 412 14 0.1739 0.0194 0.5714 7.9 1yaa:B, 1yaa:C, 1yaa:D
16 7d6n:D 589 28 0.2609 0.0204 0.4286 9.4 7d6n:A, 7d6n:B, 7d6n:E, 7d6n:C, 7d6n:F, 7d6n:G, 7d6n:J, 7d6n:I, 7d6n:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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