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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MDKLLRRVRMAEGMVARRAQRKNALLKRITERKQNKKNGEAFTEAIQQRKAAVEARNEDWMLGPLAPRRELDEITLSNGN
FFGSLSPTRALLESEVSEEERKARVAWCGSPKFLCIAPGDRVVVIEGHHKDLIGTIEKLNTRNMTVEIQSEKLKTNTTVP
QFMQNDADKPVTQIYARLPISSVRLVHPLKDPQTGEYRDVIIRELRPRNIVHDRPTRTRSMRRFVPGENIIIPWPKQEPI
KREDQPADTLRIDVDEKTFVPTLFRPPAPQQVLDELRNKYSIFRTRHTPEYIAKKEQEEQEKEAKKSAAKAMLTPVQEYN
RKQRELRRARGQPALTEEMLAKIGEVVARNKLG

The query sequence (length=353) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6ywe:Q 353 353 1.0000 1.0000 1.0000 0.0 6yws:Q, 6ywv:Q, 6ywx:Q, 6ywy:Q
2 5mrc:Q 284 261 0.1841 0.2289 0.2490 3.43e-09 3j6b:Q, 5mre:Q, 5mrf:Q
3 4v5i:AS 298 80 0.0595 0.0705 0.2625 0.37 4v5i:AT, 4v5i:AU, 4v5i:AV, 4v5i:AW, 4v5i:AX, 4v5i:BS, 4v5i:BT, 4v5i:BU, 4v5i:BV, 4v5i:BW, 4v5i:BX
4 5mmi:V 134 47 0.0567 0.1493 0.4255 0.43 6eri:AU, 5h1s:W, 5mlc:W, 5mmm:V, 4v61:BW, 5x8p:V, 5x8t:V
5 6cg7:A 207 48 0.0538 0.0918 0.3958 0.73 6cg7:B
6 3tzc:A 224 39 0.0368 0.0580 0.3333 0.76
7 7ood:i 144 59 0.0567 0.1389 0.3390 1.3 7p6z:i, 7pah:i, 7pai:i, 7paj:i, 7pak:i, 7pal:i, 7pam:i, 7pan:i, 7pao:i, 7paq:i, 7par:i, 7pas:i, 7pat:i, 7pau:i, 7ph9:i, 7pha:i, 7phb:i, 7phc:i, 7pi8:i, 7pi9:i, 7pia:i, 7pib:i, 7pic:i, 7pio:i, 7pip:i, 7piq:i, 7pir:i, 7pis:i, 7pit:i
8 5xxb:X 124 80 0.0595 0.1694 0.2625 1.4
9 4lxo:A 184 37 0.0340 0.0652 0.3243 1.6 4lxo:B
10 6z1p:Ay 190 83 0.0708 0.1316 0.3012 3.4
11 8i0p:K 312 32 0.0312 0.0353 0.3438 4.3
12 8p5d:LY0 131 37 0.0312 0.0840 0.2973 4.9 8p60:LY0, 8p60:KY0, 7qca:LY0
13 7mjr:A 899 19 0.0340 0.0133 0.6316 5.1
14 6zj3:SG 248 64 0.0595 0.0847 0.3281 5.9
15 6r1g:A 148 55 0.0453 0.1081 0.2909 6.5 6r1g:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218