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BioLiP
>protein
MDKINPDWAKDIPCRNITIYGYCKKEKEGCPFKHSDNTTAT

The query sequence (length=41) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4cyk:A 41 41 1.0000 1.0000 1.0000 3.35e-26
2 8g99:C 381 8 0.1707 0.0184 0.8750 2.5
3 9c8v:B 434 8 0.1707 0.0161 0.8750 2.5 8d0k:E, 8d96:B, 8d9d:B, 5exr:B, 5exr:F, 5f0q:A, 5f0q:B, 5f0s:A, 5f0s:B, 3l9q:A, 7opl:D, 3q36:A, 3q36:B, 8qj7:D, 4rr2:D, 7u5c:B, 8vy3:B
4 8g9f:C 446 8 0.1707 0.0157 0.8750 2.5 8g9l:B, 8g9o:B, 8ucv:B, 8v6g:C, 8v6h:C, 8v6i:C, 8v6j:C
5 6dhw:A 170 8 0.1707 0.0412 0.8750 3.9 6dhw:B, 5dqo:A, 5dqo:B, 5dqo:C, 5dqo:D, 5i7m:A, 5i7m:B, 3l9q:B
6 3a3w:A 329 17 0.2195 0.0274 0.5294 7.8 3a3x:A, 3a4j:A, 3c86:A, 2d2g:A, 2d2h:A, 2d2j:A, 4np7:A, 3ood:A, 3oqe:A, 2r1k:A, 2r1l:A, 2r1m:A, 2r1n:A, 2r1p:A, 3so7:A, 5vej:A, 5w7h:A, 5w7h:B, 3wml:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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