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BioLiP
>protein
MDEKRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNHR

The query sequence (length=65) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1an4:A 65 65 1.0000 1.0000 1.0000 9.01e-43 1an4:B
2 8ia3:E 111 61 0.7538 0.4414 0.8033 5.21e-32 8ia3:A, 8ia3:B, 8ia3:F
3 1hlo:A 80 63 0.4000 0.3250 0.4127 4.95e-09
4 5eyo:C 88 60 0.3846 0.2841 0.4167 1.42e-08 1an2:A, 5eyo:A, 1hlo:B, 1nkp:B, 1nkp:E, 1nlw:B, 1nlw:E
5 8ow1:B 116 60 0.3692 0.2069 0.4000 2.45e-07 8ovw:A, 8ovw:B, 8ow0:A, 8ow0:B, 8ow1:A, 7ssa:L, 7ssa:K
6 1am9:C 82 61 0.3231 0.2561 0.3443 1.64e-06 1am9:D, 1am9:A, 1am9:B
7 7f2f:B 94 62 0.3846 0.2660 0.4032 8.14e-06 7f2f:A
8 5nj8:D 134 58 0.3231 0.1567 0.3621 9.38e-06
9 7d8t:A 199 57 0.3538 0.1156 0.4035 1.99e-05 4ati:A, 4ati:B, 4atk:A, 4atk:B, 7d8t:B, 6g1l:A, 8vu0:A, 8vu0:B
10 7xi4:A 283 60 0.3231 0.0742 0.3500 2.88e-05 8g4a:A, 8g4a:B, 5nj8:B, 5sy7:A, 5v0l:A, 7xhv:A, 4zph:A, 4zpk:A
11 7xi3:A 287 55 0.3077 0.0697 0.3636 7.71e-05
12 8osl:N 290 35 0.2154 0.0483 0.4000 4.59e-04 4h10:A, 8osk:N, 8osl:P
13 4zpr:A 235 29 0.2000 0.0553 0.4483 0.001
14 5gnj:B 77 52 0.2769 0.2338 0.3462 0.002 5gnj:G, 5gnj:I, 5gnj:A, 5gnj:E, 5gnj:F, 5gnj:M, 5gnj:N
15 1nlw:A 79 61 0.3077 0.2532 0.3279 0.038 1nlw:D
16 1a0a:A 63 58 0.2308 0.2381 0.2586 0.088 1a0a:B
17 5i50:B 96 52 0.2769 0.1875 0.3462 0.18 5i50:A, 1nkp:A, 1nkp:D
18 8r0s:A 470 31 0.2308 0.0319 0.4839 0.23
19 8hov:A 87 71 0.2769 0.2069 0.2535 1.6 8hov:C, 8hov:B, 8hov:D, 8hov:E, 8hov:F
20 8osb:B 66 59 0.3231 0.3182 0.3559 2.1
21 6fb3:A 1836 38 0.2000 0.0071 0.3421 2.3 6fb3:B, 6fb3:C, 6fb3:D, 6ska:A, 6ske:A, 6ske:C
22 6fxg:B 226 30 0.1692 0.0487 0.3667 3.1 8b5d:A, 8b5d:B, 8b5e:A, 8b5e:B, 6fxg:A, 6fxg:C
23 5fsg:A 661 21 0.1077 0.0106 0.3333 5.9
24 7f09:C 67 46 0.2308 0.2239 0.3261 6.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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