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BioLiP
>protein
MDEGDKKSPISQVHEIGIKRNMTVHFKVLREEGPAHMKNFITACIVGSIVTEGEGNGKKVSKKRAAEKMLVELQKL

The query sequence (length=76) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1ekz:A 76 76 1.0000 1.0000 1.0000 2.79e-51
2 6sdw:A 177 70 0.5658 0.2429 0.6143 3.95e-22 6htu:A, 6htu:B, 6htu:C, 6sdy:A
3 6sdw:A 177 64 0.3026 0.1299 0.3594 5.81e-05 6htu:A, 6htu:B, 6htu:C, 6sdy:A
4 1di2:A 69 67 0.2763 0.3043 0.3134 2.59e-09
5 7zpk:C 233 70 0.2895 0.0944 0.3143 1.63e-07 3adl:A, 5n8l:A, 5n8m:A
6 7zpk:C 233 68 0.3421 0.1116 0.3824 8.66e-04 3adl:A, 5n8l:A, 5n8m:A
7 2l3j:A 236 66 0.2895 0.0932 0.3333 6.55e-05 2l3c:A
8 2l3j:A 236 64 0.2895 0.0932 0.3438 0.002 2l3c:A
9 1yyk:A 221 45 0.2237 0.0769 0.3778 1.96e-04 2ez6:A, 2ez6:B, 1jfz:A, 1jfz:B, 1jfz:C, 1jfz:D, 4m2z:A, 4m2z:B, 4m30:A, 4m30:B, 2nue:A, 2nuf:A, 2nuf:B, 2nug:A, 2nug:B, 1rc5:A, 1rc5:B, 1rc5:C, 1rc5:D, 1rc7:A, 1yyo:A, 1yyw:A, 1yyw:C, 1yz9:A
10 8dfv:K 253 68 0.2632 0.0791 0.2941 6.75e-04 8dg5:K
11 7v6c:B 260 62 0.2368 0.0692 0.2903 0.002
12 1di2:B 60 67 0.2237 0.2833 0.2537 0.004
13 8e0f:B 454 39 0.1711 0.0286 0.3333 0.039 6d06:A, 6d06:D, 8e0f:A, 8e4x:A, 8e4x:B, 5ed1:A, 5ed1:D, 5ed2:A, 5ed2:D, 5hp2:A, 5hp2:D, 5hp3:A, 5hp3:D, 7kfn:A, 7kfn:D, 2l2k:B, 6vff:A, 6vff:B, 1zy7:A, 1zy7:B
14 8jkk:D 383 43 0.2105 0.0418 0.3721 0.24 8jkk:A, 8jkk:G, 8jkk:J, 7w5p:A, 7w5p:H, 7w5p:D, 7w5p:G
15 7zlq:B 82 64 0.2105 0.1951 0.2500 1.8 7zlq:A
16 8sgd:A 291 38 0.1842 0.0481 0.3684 5.2 8fwp:A, 8pfh:A, 8sgd:C
17 5x20:A 312 38 0.1711 0.0417 0.3421 6.6 3wfj:A, 3wfj:B, 3wfj:C, 3wfj:D, 3wfj:E, 3wfj:G, 5x20:B, 5x20:C, 5x20:D, 5x20:E
18 6lkb:A 160 21 0.1184 0.0563 0.4286 7.9 6lkb:B
19 3rv0:B 304 60 0.2500 0.0625 0.3167 9.3 3rv0:A, 3rv0:C, 3rv0:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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