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BioLiP
>protein
MAVSVTPIRDTKWLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIACFDSLKGRCSRENCKYLHPPPHLKTQLE
INGRNNLIQQKN

The query sequence (length=92) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5u6h:A 92 92 1.0000 1.0000 1.0000 1.44e-66 3d2n:A, 5u9b:A
2 2rpp:A 89 79 0.7717 0.7978 0.8987 4.24e-50
3 2e5s:A 98 67 0.3913 0.3673 0.5373 8.99e-24 3d2q:A, 3d2q:B, 3d2q:C, 3d2q:D, 3d2s:A, 3d2s:B, 3d2s:C, 3d2s:D
4 5u6l:A 83 67 0.3804 0.4217 0.5224 1.58e-23
5 2d9n:A 77 62 0.2174 0.2597 0.3226 0.018 2rhk:C
6 6dnh:C 117 68 0.2174 0.1709 0.2941 0.047 8e3i:C, 8e3q:C, 6fuw:C, 8r8r:C, 2rhk:D, 6urg:C, 6uro:C
7 2iu8:A 346 56 0.1739 0.0462 0.2857 1.2 2iu8:B, 2iu8:C, 2iu9:A, 2iu9:B, 2iu9:C, 2iua:A, 2iua:C
8 3j7a:L 172 42 0.1304 0.0698 0.2857 5.2 3jbn:L, 3jbo:L, 3jbp:L, 6okk:L, 8tpu:SL
9 7lci:R 393 30 0.1087 0.0254 0.3333 8.0 7c2e:R, 7duq:R, 7e14:R, 7evm:R, 7fim:R, 8jip:R, 8jir:R, 8jis:R, 7lcj:R, 7lck:R, 5nx2:A, 6orv:RP, 7s15:R, 7s1m:R, 7vbh:R, 7vbi:R, 6vcb:R, 6x19:R, 6x1a:R, 7x8r:R, 7x8s:R, 6xox:R
10 4v6w:AI 207 26 0.1087 0.0483 0.3846 9.6 6xu6:AI, 6xu7:AI, 6xu8:AI
11 6m5r:B 689 19 0.0870 0.0116 0.4211 9.7 6m5s:B, 6m5u:B, 6m5v:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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