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BioLiP
>protein
MATNGMRPIHPGEILRDEFLMEFDISPAALARALKVSAPTVNDIVREQRGISADMAIRLGRYFDTSAQFWMNLQSEYSLA
TAYAANGKQIEHEIEPL

The query sequence (length=97) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7csy:B 97 97 1.0000 1.0000 1.0000 1.48e-69 7csw:B, 7csy:A, 7csy:C, 7csy:D, 6jpi:A, 6jpi:B, 6jpi:C, 6jpi:D, 6lb3:A, 6lb3:B, 6lb3:G, 6lb3:H, 6lb3:C, 6lb3:D, 6lb3:E, 6lb3:F
2 6fix:B 99 94 0.5464 0.5354 0.5638 7.11e-34 6fix:A, 6fix:D, 6fix:E
3 2icp:A 87 73 0.2577 0.2874 0.3425 2.58e-09
4 6chv:D 91 87 0.2474 0.2637 0.2759 1.63e-06 6chv:A, 6chv:C, 6chv:B, 6chv:G, 6chv:H
5 7tbv:A 682 51 0.1649 0.0235 0.3137 0.36 7tbv:B, 7tbv:C, 7tbv:D
6 2fva:A 82 54 0.1546 0.1829 0.2778 0.82
7 7shw:B 259 44 0.1340 0.0502 0.2955 5.0 7shw:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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