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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MASVERDETREHRIETEIIVDAEDKEERAMGWYYYLDDTLEFPFMGKWKKKSRKTSTIEEKTVEVLGMAPDDECLKDMYV
EVADIGGKDDDVYTAKLSDIEAIDVDDDTQEAIADWLYWLARGYKF

The query sequence (length=126) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2k2v:A 126 126 1.0000 1.0000 1.0000 2.74e-88 3urg:A
2 8a3w:R 178 54 0.1190 0.0843 0.2778 0.81 8a98:R, 6az3:R, 3jcs:R, 8ovj:R, 8rxh:LR, 8rxx:LR, 5t2a:Q
3 5kvu:A 738 67 0.1349 0.0230 0.2537 2.1 5kvu:B, 5kvu:C, 5kvu:D
4 3di1:B 291 42 0.1190 0.0515 0.3571 2.5 3di1:A
5 7d38:A 288 73 0.1508 0.0660 0.2603 3.7 7d39:A, 7d3a:A, 7d3b:A
6 7oz9:BBB 483 48 0.0952 0.0248 0.2500 4.0 7oz9:AAA
7 8jbi:C 157 89 0.1746 0.1401 0.2472 5.4 8jbi:D, 8jbi:A, 8jbi:B
8 1sjg:A 112 29 0.1032 0.1161 0.4483 6.8 4p1b:H, 4p1b:I, 4p1c:H, 4p1c:I, 2q3w:A, 1vm9:A
9 2fsn:B 311 45 0.1111 0.0450 0.3111 8.6 2fsn:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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