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BioLiP
>protein
MAMVNTTTRLSDDALAFLSERHLAMLTTLRADNSPHVVAVGFTFDPKTHIARVITTGGSQKAVNADRSGLAVLSQVDGAR
WLSLEGRAAVNSDIDAVRDAELRYAQRYRTPRPNPRRVVIEVQIERVLGSADLLD

The query sequence (length=135) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5jab:A 135 135 1.0000 1.0000 1.0000 7.49e-96 2asf:A, 5jab:B, 5jab:C, 5jab:D
2 8aa2:E 497 66 0.1556 0.0423 0.3182 0.006 8aa2:M, 6r3r:A, 6r3u:A, 7znr:A, 7znr:B, 7zns:A, 7zns:B
3 7suk:LV 362 94 0.1852 0.0691 0.2660 0.21 7ajt:JC, 7d63:RA, 6ke6:RA, 6lqp:RA, 6lqq:RA, 6lqr:RA, 6lqu:RA, 6lqv:RA, 5wlc:LV, 6zqb:JC, 6zqc:JC
4 4tm7:A 243 42 0.1185 0.0658 0.3810 0.65
5 8hku:L13P 140 72 0.1852 0.1786 0.3472 1.1 8hkv:L13P, 8hky:L13P, 8hkz:L13P, 8hl1:L13P, 8hl2:L13P, 8hl3:L13P, 8hl4:L13P, 8hl5:L13P
6 5jv4:A 142 30 0.0963 0.0915 0.4333 1.6 5jv4:D, 5jv4:B, 5jv4:E, 5jv4:C, 5jv4:F
7 1e8u:B 449 50 0.1111 0.0334 0.3000 6.0 7bwu:B, 7bwu:D, 7bwu:A, 7bwu:C, 1e8t:A, 1e8u:A, 1e8v:A, 1e8v:B, 1usr:A, 1usr:B, 1usx:A, 1usx:B, 1usx:C
8 6hyp:A 2272 46 0.1037 0.0062 0.3043 7.1
9 1ddv:A 104 32 0.0741 0.0962 0.3125 7.3
10 5jcs:s 2003 46 0.1037 0.0070 0.3043 8.2
11 7wi7:A 565 34 0.0889 0.0212 0.3529 9.2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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