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BioLiP
>protein
MALTDTQVYVALVIALLPAVLAFRLSTELYK

The query sequence (length=31) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4fe1:M 31 31 1.0000 1.0000 1.0000 2.77e-15 7fix:M1, 7fix:M2, 7fix:M3, 1jb0:M, 6k33:aM, 6k33:bM, 6k33:cM, 6lu1:M, 7m75:M, 7m76:M, 3pcq:M, 6pfy:M, 6pfy:V, 6pfy:i, 6pgk:M, 6pgk:V, 6tra:M, 6trc:M, 6trc:m, 6trc:y, 6trd:m, 6trd:y, 5zf0:M1, 5zf0:M2, 5zf0:M3, 5zf0:M4, 5zf0:M6, 5zf0:M5
2 7qco:T 31 31 0.7742 0.7742 0.7742 2.02e-12 6vpv:M, 6vpv:m, 6vpv:z
3 6kmw:aM 31 31 0.8065 0.8065 0.8065 2.09e-12 6kmw:bM, 6kmw:cM, 6kmx:aM, 6kmx:bM, 6kmx:cM
4 8am5:m 31 31 0.8065 0.8065 0.8065 9.95e-12 8asl:m, 8asp:m, 6hqb:M, 4kt0:M, 4l6v:M, 4l6v:m, 4l6v:7, 6nwa:M, 6nwa:m, 6nwa:V, 7o1v:M, 5oy0:M, 5oy0:m, 5oy0:9, 7umh:M, 7umh:V, 7umh:m, 6uzv:M, 6uzv:m, 6uzv:9
5 6k61:M 31 30 0.6452 0.6452 0.6667 2.04e-10 6jeo:aM, 6jeo:bM, 6jeo:cM, 6jeo:dM, 6k61:m, 7lx0:V, 7lx0:m, 7lx0:M, 6pnj:M, 6pnj:V, 6pnj:m, 6tcl:M1, 6tcl:M2, 6tcl:M, 6tcl:MM, 7y3f:M
6 7s3d:M 31 31 0.6129 0.6129 0.6129 5.22e-09 7s3d:V, 7s3d:m
7 7yca:M 31 31 0.5484 0.5484 0.5484 3.75e-07
8 6l4u:M 30 27 0.5161 0.5333 0.5926 2.92e-05
9 8wm6:M 30 29 0.4516 0.4667 0.4828 8.21e-05 8wmj:M, 8wmv:M, 8wmw:M, 7y7b:M, 7y8a:M
10 7xqp:M 32 30 0.4194 0.4062 0.4333 6.51e-04 8htu:M, 7ksq:M, 7kux:M
11 6igz:M 31 30 0.3226 0.3226 0.3333 0.003
12 7a4p:M 31 31 0.4516 0.4516 0.4516 0.006 6zzx:M, 6zzy:M
13 7y5e:MN 30 28 0.5161 0.5333 0.5714 1.2 7y5e:M2, 7y7a:M7, 7y7a:Mo
14 6j9f:D 1215 31 0.4194 0.0107 0.4194 4.4 6j9e:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417