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BioLiP
>protein
MALQADFDRAAEDVRKLKARPDDGELKELYGLYKQAIVGDINIACPGMLDLKGKAKWEAWNLKKGLSTEDATSAYISKAK
ELIEKYGI

The query sequence (length=88) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3epy:A 88 88 1.0000 1.0000 1.0000 1.42e-59 3epy:B
2 1aca:A 86 85 0.6023 0.6163 0.6235 1.87e-32 2cb8:A, 2cb8:B, 2fj9:A, 1nvl:A
3 3fp5:A 106 89 0.4318 0.3585 0.4270 1.12e-17
4 7fc7:A 96 90 0.3864 0.3542 0.3778 4.73e-15
5 2wh5:A 90 86 0.3523 0.3444 0.3605 2.47e-12 2wh5:B, 2wh5:C, 2wh5:D, 2wh5:F, 2wh5:E
6 3flv:A 92 85 0.2841 0.2717 0.2941 1.66e-09 3flv:B
7 1hbk:A 89 61 0.2500 0.2472 0.3607 2.42e-06
8 8azw:r 386 34 0.1477 0.0337 0.3824 4.7 8b2l:r3, 7qiw:E, 7qiz:E
9 3l24:B 417 45 0.1591 0.0336 0.3111 5.3 3l24:C, 3l7g:B, 3l7g:C
10 6nz4:A 467 70 0.2386 0.0450 0.3000 7.9 6nz4:B, 6nz5:B, 6nz6:A, 6nz6:B
11 6xux:A 879 51 0.2045 0.0205 0.3529 8.7
12 5gw7:B 760 51 0.2045 0.0237 0.3529 9.6 5ca3:A, 5ca3:B, 3d3i:A, 3d3i:B, 5gw7:A, 3w7s:A, 3w7s:B, 3w7t:A, 3w7t:B, 3w7u:A, 3w7u:B, 3w7w:A, 3w7w:B, 3w7x:A, 3w7x:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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