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BioLiP
>protein
MALNLQDKQAIVAEVSEVAKGALSAVVADSRGVTVDKMTELRKAGREAGVYMRVVRNTLLRRAVEGTPFECLKDAFVGPT
LIAY

The query sequence (length=84) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3j9z:LD 164 83 0.9881 0.5061 1.0000 1.54e-55 7abz:H, 7ac7:H, 5ady:7, 5afi:5, 7bl5:e, 6bu8:10, 7bv8:I, 6by1:C5, 6c4i:I, 7cpj:5, 6dnc:L, 8fiz:DG, 8fzd:I, 8fze:I, 8fzf:I, 8fzg:I, 8fzh:I, 8fzi:I, 8fzj:I, 5gad:I, 5gae:I, 5gaf:I, 5gag:I, 5gah:I, 6gwt:5, 6gxm:5, 6gxn:5, 6gxo:5, 6gxp:5, 5h5u:I, 6hrm:H, 6i0y:5, 5iqr:H, 5it8:DI, 5j5b:DI, 3j7z:5, 5j7l:DI, 5j88:DI, 5j8a:DI, 3j9y:5, 5j91:DI, 3ja1:LJ, 3jcj:e, 5jc9:DI, 7jsz:h, 7jt2:h, 7jt3:h, 7k50:h, 7k51:h, 7k52:h, 7k53:h, 7k54:h, 7k55:h, 5kcr:1J, 5kcs:1J, 5kps:H, 5kpv:G, 5kpw:G, 5kpx:G, 5l3p:J, 6lkq:n, 7lv0:h, 7m5d:H, 5mdv:H, 5mdw:H, 5mdy:H, 5mdz:H, 7n1p:LJ, 7n2c:LJ, 7n2v:LJ, 5nco:I, 5np6:3, 7nwt:H, 5o2r:5, 6o9k:G, 7oj0:5, 8peg:j, 8phj:5, 7pjs:5, 7pjt:5, 7pju:5, 7pjv:5, 7pjw:5, 7pjx:5, 7pjy:5, 7pjz:5, 8pkl:j, 6q97:H, 6q98:H, 6q9a:H, 6s0k:I, 7sa4:H, 7sso:h, 7st2:h, 7tos:L10, 5u9f:10, 5u9g:10, 7ug7:LJ, 8upo:9, 8upr:9, 8uql:9, 8uqm:9, 8uqp:9, 8ur0:9, 8urh:9, 8uri:9, 8urx:9, 8ury:9, 4uy8:5, 5uyk:10, 5uyl:10, 5uym:10, 5uyn:10, 5uyp:10, 5uyq:10, 4v6n:AJ, 4v6o:BJ, 4v6p:BJ, 4v6q:BJ, 4v6r:BJ, 4v6s:AJ, 4v6v:BJ, 4v7b:B5, 4v7c:BJ, 4v7d:AJ, 4v85:BH, 4v89:BH, 4v9o:A5, 4v9o:C5, 4v9o:E5, 4v9p:A5, 4v9p:E5, 8vs9:L10, 8vsa:L10, 6vu3:9, 6vyq:9, 6vyr:9, 6vys:9, 6vzj:9, 5wdt:5, 6wd0:h, 6wd1:h, 6wd2:h, 6wd3:h, 6wd4:h, 6wd5:h, 6wd6:h, 6wd7:h, 6wd8:h, 6wd9:h, 6wda:h, 6wdb:h, 6wdc:h, 6wdd:h, 6wde:h, 6wdf:h, 6wdg:h, 6wdh:h, 6wdi:h, 6wdj:h, 6wdk:h, 6wdl:h, 6wdm:h, 5we4:5, 5we6:5, 5wf0:5, 5wfk:5, 5wfs:5, 6wnt:h, 6wnv:h, 6wnw:h, 6x6t:9, 6x7f:9, 6x7k:9, 6x9q:9, 6xdq:9, 6xdr:9, 6xgf:9, 6xii:9, 6xij:9, 6xz7:H, 6xza:H2, 6xzb:H2, 4ybb:DI, 6ysr:5, 6yss:5, 6yst:5, 6ysu:5, 6ztj:BI
2 7unv:I 118 84 0.7262 0.5169 0.7262 9.57e-38 7unr:I, 7unu:I, 7unw:I
3 8uu8:I 129 84 0.4048 0.2636 0.4048 3.35e-16
4 3j9w:BJ 123 80 0.3810 0.2602 0.4000 9.91e-16 7as8:L, 7as9:L, 5njt:b, 7o5b:p, 7ope:L, 7qgu:H, 7qh4:H, 6tnn:b, 6tpq:b
5 6dzi:I 126 78 0.3690 0.2460 0.3974 9.85e-12 6dzp:I, 8fr8:R, 8kab:I, 5o60:I, 5o61:I, 7s0s:J, 8v9j:I, 8v9k:I, 8v9l:I, 7xam:I, 8xz3:I, 7y41:I, 5zeb:I, 5zep:I, 5zet:I
6 1zav:A 178 85 0.4048 0.1910 0.4000 5.17e-11 1zaw:A, 1zax:A
7 7pah:g 126 65 0.2381 0.1587 0.3077 1.87e-04 7ood:g, 7p6z:g, 7pai:g, 7paj:g, 7pak:g, 7pal:g, 7pam:g, 7pan:g, 7pao:g, 7paq:g, 7par:g, 7pas:g, 7pat:g, 7pau:g, 7ph9:g, 7pha:g, 7phb:g, 7phc:g, 7pi8:g, 7pi9:g, 7pia:g, 7pib:g, 7pic:g, 7pio:g, 7pip:g, 7piq:g, 7pir:g, 7pis:g, 7pit:g
8 6xyw:Ah 137 51 0.2262 0.1387 0.3725 8.66e-04
9 8fmw:AJ 162 54 0.1786 0.0926 0.2778 0.006 8fn2:J
10 5a9z:AI 153 75 0.2500 0.1373 0.2800 0.19 5aa0:AI, 6gsl:38, 5hau:1J, 5hau:2J, 5imq:2, 5imr:2, 5j8b:J, 6qnq:38, 4v6f:DY, 4v7j:AJ, 4v7j:BJ, 4v7k:AJ, 4v7k:BJ, 4w2e:J, 4wpo:AK, 4wpo:CK, 4wqf:AK, 4wqf:CK, 4wqu:AK, 4wqu:CK, 4wqy:AK, 4wqy:CK, 5zlu:e
11 8any:I 212 69 0.2143 0.0849 0.2609 0.43 7a5f:I3, 7a5g:I3, 7a5h:I, 7a5i:I3, 7a5j:I, 7a5k:I3, 6i9r:I, 3j7y:I, 3j9m:I, 8k2a:LJ, 8k2b:LJ, 7l08:I, 7l20:I, 6nu2:I, 6nu3:I, 7o9k:I, 7o9m:I, 7odr:I, 7ods:I, 7odt:I, 7of0:I, 7of2:I, 7of3:I, 7of4:I, 7of5:I, 7of6:I, 7of7:I, 7og4:XI, 7oi6:I, 7oi7:I, 7oi8:I, 7oi9:I, 7oia:I, 7oib:I, 7oic:I, 7oid:I, 7oie:I, 8oir:BP, 8oit:BP, 5ool:I, 5oom:I, 7pd3:G, 8pk0:I, 7po4:I, 7qh7:I, 7qi4:I, 7qi5:I, 7qi6:I, 8qsj:I, 8qu1:I, 8qu5:I, 6vlz:I, 6vmi:I, 8xt0:LJ, 8xt1:LJ, 8xt2:LJ, 8xt3:LJ, 6zm5:I, 6zm6:I, 6zs9:XI, 6zsa:XI, 6zsb:XI, 6zsc:XI, 6zsd:XI, 6zse:XI, 6zsg:XI
12 8wiv:O 657 27 0.1310 0.0167 0.4074 0.46 8wiv:M, 8wiv:L, 8wj3:M, 8wj3:O, 8wj3:L, 8wk0:M, 8wk0:O, 8wk0:L
13 8wk0:N 542 27 0.1310 0.0203 0.4074 0.47
14 8wiv:D 602 27 0.1310 0.0183 0.4074 0.48 8wk0:D
15 4v4n:Ak 212 58 0.1786 0.0708 0.2586 1.4 4v6u:Bk
16 8e3x:R 362 28 0.1190 0.0276 0.3571 2.8 6m1i:A, 6p9y:R
17 8buu:h 131 39 0.1667 0.1069 0.3590 5.3 8cdu:I, 8cdv:I, 8cec:I, 8ced:I, 8cee:I, 6ha1:h, 6ha8:h, 6htq:h, 3j9w:AH, 5njt:H, 7o5b:H, 8qcq:h, 7qgu:m, 7qh4:l, 8qpp:H, 7qv1:h, 7qv2:h, 7qv3:h, 8r55:H
18 7ooc:G 141 28 0.1310 0.0780 0.3929 7.0 7p6z:G, 7pah:G, 7pai:G, 7paj:G, 7pak:G, 7pal:G, 7pam:G, 7pan:G, 7pao:G, 7paq:G, 7par:G, 7pas:G, 7ph9:G, 7pha:G, 7phb:G, 7phc:G, 7pi8:G, 7pi9:G, 7pia:G, 7pib:G, 7pic:G, 7pio:G, 7pip:G, 7piq:G, 7pir:G, 7pis:G, 7pit:G
19 2bf4:A 645 48 0.1667 0.0217 0.2917 7.6 2bf4:B, 2bn4:A, 2bn4:B, 2bpo:A, 2bpo:B
20 4v9f:G 254 58 0.2024 0.0669 0.2931 9.8 2qa4:G

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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