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BioLiP
>protein
MAKKDIMGDKTVRVRADLHHIIKIETAKNGGNVKEVMDQALEEYIRKYLPDKL

The query sequence (length=53) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2bnw:B 53 53 1.0000 1.0000 1.0000 1.53e-33 2bnw:A, 2bnw:C, 2bnw:D, 2bnz:A, 2bnz:B, 2bnz:C, 2bnz:D, 2cax:B, 2cax:C, 2cax:D, 2cax:A
2 1rqg:A 606 49 0.2642 0.0231 0.2857 0.30
3 6n67:A 388 25 0.2075 0.0284 0.4400 1.9 6n0t:A
4 3ugg:A 524 25 0.1887 0.0191 0.4000 3.7 3ugg:B, 3ugh:B
5 6szs:z 362 23 0.2075 0.0304 0.4783 4.6
6 8p0o:A 622 42 0.1887 0.0161 0.2381 4.7 8p0o:B, 8p0p:A, 8p0p:B, 8p0q:A, 8p0q:B
7 4b4u:B 286 48 0.2642 0.0490 0.2917 4.8 4b4u:A, 4b4v:A, 4b4v:B, 4b4w:A, 4b4w:B
8 3or1:B 385 20 0.1887 0.0260 0.5000 5.6 3or1:E, 3or2:B, 3or2:E
9 7va8:A 456 41 0.2075 0.0241 0.2683 6.0 7va8:B, 7vaa:A, 7vaa:B
10 3e13:X 317 41 0.2642 0.0442 0.3415 6.1 1y4t:A, 1y4t:D
11 8bx8:C 3947 31 0.1887 0.0025 0.3226 6.3 7k58:C, 7k5b:C, 7kek:C
12 8hkx:AS8P 130 12 0.1698 0.0692 0.7500 7.2 8hky:AS8P, 8hkz:AS8P, 8hl1:AS8P, 8hl2:AS8P, 8hl3:AS8P, 8hl4:AS8P, 8hl5:AS8P, 8wkp:AS8P, 8wq2:AS8P, 8wq4:AS8P
13 7dwm:A 218 50 0.2830 0.0688 0.3000 7.3 7dwm:B
14 3ua3:A 662 20 0.1698 0.0136 0.4500 7.8 3ua3:B
15 6pdy:A 262 36 0.2075 0.0420 0.3056 7.9 6pe0:A
16 6pdw:D 299 36 0.2075 0.0368 0.3056 8.9 6pdw:B, 6pdw:C, 6pdw:E, 6pdw:F, 6pdy:F, 6pdy:C, 6pdy:D, 6pdy:E, 6pdy:B, 6pe0:B, 6pe0:C, 6pe0:D, 6pe0:E, 6pe0:F
17 4i4t:F 357 45 0.3019 0.0448 0.3556 9.6 8a0l:F, 7au5:F, 8b7a:F, 8b7c:F, 8bde:F, 5bmv:F, 8c0f:F, 5c8y:F, 5ca0:F, 5ca1:F, 5cb4:F, 7cda:F, 7ce6:F, 7ce8:F, 7cek:F, 7cld:F, 8cld:F, 8clg:F, 7cnm:F, 7cno:G, 7dad:F, 7dae:F, 7daf:F, 7db9:F, 7dbb:F, 7dbc:F, 7dbd:F, 7dp8:F, 7e4p:F, 7e4r:F, 7e4z:F, 6eg5:F, 7emj:F, 7en3:F, 7exc:F, 5ezy:F, 6fii:F, 6fjf:F, 6fjm:F, 6fkj:F, 6fkl:F, 5h74:F, 5h7o:F, 4i55:F, 6i5c:F, 4ihj:F, 5j2u:F, 7jfr:F, 5jh7:F, 8jjb:F, 8jjc:F, 5jvd:F, 6k9v:F, 6knz:F, 5kx5:F, 7l05:F, 5la6:F, 6lsm:F, 6lsn:F, 5lxs:F, 5lxt:F, 5m8d:F, 6n47:F, 5nfz:F, 5ng1:F, 5njh:F, 6nng:F, 4o4h:F, 4o4i:F, 5ov7:F, 8r67:F, 8riv:F, 8riw:F, 5s4l:F, 5s4m:F, 5s4n:F, 5s4o:F, 5s4p:F, 5s4q:F, 5s4r:F, 5s4s:F, 5s4t:F, 5s4u:F, 5s4v:F, 5s4w:F, 5s4x:F, 5s4y:F, 5s4z:F, 5s50:F, 5s51:F, 5s52:F, 5s53:F, 5s55:F, 5s56:F, 5s57:F, 5s58:F, 5s59:F, 5s5a:F, 5s5b:F, 5s5c:F, 5s5d:F, 5s5e:F, 5s5f:F, 5s5g:F, 5s5h:F, 5s5i:F, 5s5j:F, 5s5k:F, 5s5l:F, 5s5m:F, 5s5n:F, 5s5o:F, 5s5p:F, 5s5q:F, 5s5r:F, 5s5s:F, 5s5t:F, 5s5u:F, 5s5v:F, 5s5w:F, 5s5x:F, 5s5y:F, 5s5z:F, 5s60:F, 5s61:F, 5s62:F, 5s63:F, 5s64:F, 5s65:F, 5s66:F, 5s67:F, 5sb3:F, 5sb4:F, 5sb5:F, 5sb7:F, 5sb8:F, 5sba:F, 5sbb:F, 5sbc:F, 5sbd:F, 5sbe:F, 4tuy:F, 4tv8:F, 4tv9:F, 7vmk:F, 8wd0:F, 5xlt:F, 5xlz:F, 5xp3:F, 6y4m:F, 6y4n:F, 6y6d:F, 5yl2:F, 5ylj:F, 5yls:F, 5yz3:F, 7z2n:F, 7z2p:F, 7z7d:F, 8zb8:F, 4zhq:F, 4zi7:F, 4zol:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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