Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MAKIILRHLIGKSHFQILLDVVQFLPEDIIIQTFEGWLLIKAQHGTRMDEHGFISRSFTRQYKLPDGVEIKDLSAVLCHD
GILVVEVK

The query sequence (length=88) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6f2r:Q 89 89 1.0000 0.9888 0.9888 1.35e-58 6f2r:T, 6f2r:V
2 6gjh:F 87 82 0.3750 0.3793 0.4024 2.17e-18 6gjh:D, 6gjh:H, 6gjh:B, 4mjh:A, 4mjh:C
3 5lum:A 78 74 0.3295 0.3718 0.3919 9.77e-18 5lum:B, 5lum:D, 5lum:C, 5lum:E
4 3l1e:A 105 73 0.3523 0.2952 0.4247 1.66e-16
5 4m5s:A 87 74 0.3182 0.3218 0.3784 1.58e-14 4m5t:A, 4m5t:C, 4m5t:E, 4m5t:G
6 5xw6:C 320 28 0.1705 0.0469 0.5357 0.24 5xw6:B, 5xw6:A
7 3m85:I 259 65 0.2386 0.0811 0.3231 1.2 3m7n:I, 3m7n:G, 3m7n:H, 3m85:G, 3m85:H
8 6z2p:A 356 38 0.1477 0.0365 0.3421 3.0 6z2d:A, 6z2o:A, 6z2q:A
9 6sl1:A 2652 86 0.2500 0.0083 0.2558 4.1 6sky:A, 6sky:B
10 6n7p:B 195 23 0.1136 0.0513 0.4348 4.4 6g90:C, 6n7r:B, 6n7x:B, 7oqc:C, 7oqe:C, 5zwn:R
11 4ufc:B 788 28 0.1136 0.0127 0.3571 6.8 4ufc:A
12 8he5:O 516 47 0.1818 0.0310 0.3404 7.0
13 1xzq:A 449 25 0.1250 0.0245 0.4400 7.5 1xzq:B
14 4lqy:A 379 66 0.1591 0.0369 0.2121 7.7 4lr2:A

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218