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BioLiP
>protein
MAILKFVTYAWIIFVISLFFFGFISSDTTRNPKA

The query sequence (length=34) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7ymi:I 34 34 1.0000 1.0000 1.0000 1.63e-18 7ymi:i, 7ymm:1I, 7ymm:2I, 7ymm:3I, 7ymm:4I
2 6j3y:I 35 33 0.5294 0.5143 0.5455 1.98e-07 6j3y:i, 6j3z:I, 6j3z:i, 6j40:I, 6j40:i, 8j5k:I, 8j5k:i, 6jlu:I, 6jlu:i, 7vd5:I, 7vd5:i
3 8c29:I 36 32 0.5294 0.5000 0.5625 2.21e-06 8c29:i, 3jcu:I, 3jcu:i, 5mdx:i, 7oui:I, 7oui:i, 5xnl:I, 5xnl:i, 5xnm:I, 5xnm:i, 6yp7:i
4 8wb4:I 35 33 0.5000 0.4857 0.5152 2.95e-06 8wb4:i, 8xlp:i, 8xlp:I, 8xr6:i, 8xr6:I
5 7y5e:IL 35 33 0.5294 0.5143 0.5455 3.12e-06 7y5e:I6, 7y5e:i6, 7y5e:iL, 7y7a:I9, 7y7a:i9, 7y7a:IE, 7y7a:iE, 7y7a:IO, 7y7a:iO, 7y7a:IZ, 7y7a:iZ, 7y7a:Im, 7y7a:im
6 8tow:I 37 32 0.5294 0.4865 0.5625 9.16e-06 7n8o:I, 7n8o:i, 7rcv:I, 7rcv:i, 8tow:i, 6wj6:I
7 8wql:ID 36 33 0.4412 0.4167 0.4545 9.21e-06 8wql:IE, 8wql:I1, 8wql:i1, 8wql:iD, 8wql:iE
8 8eqm:I 34 34 0.4706 0.4706 0.4706 9.62e-06 8eqm:i
9 4yuu:I2 35 33 0.4706 0.4571 0.4848 1.50e-05 4yuu:I1, 4yuu:i1, 4yuu:i2
10 6kac:I 35 32 0.4412 0.4286 0.4688 8.33e-05 8bd3:I, 8bd3:i, 6kac:i, 6kad:I, 6kad:i, 6kaf:i, 6kaf:I, 8kde:I, 7pi0:I, 7pi0:i, 7pi5:I, 7pi5:i, 7pin:I, 7pin:i, 7pin:I1, 7pin:i1, 7piw:I, 7piw:i, 7piw:I1, 7piw:i1, 7pnk:I, 7pnk:i, 8zee:I
11 1lvg:A 190 13 0.2647 0.0474 0.6923 2.3
12 8pts:A 195 13 0.2647 0.0462 0.6923 2.3 8pts:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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