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BioLiP
>protein
LYRVLILNDDYTPMEFVVYVLERFFNKSREDATRIMLHVHQNGVGVCGVYTYEVAETKVAQVIDSARRHQHPLQCTMEKD

The query sequence (length=80) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3gq1:A 85 80 1.0000 0.9412 1.0000 5.25e-57 3dnj:A, 3dnj:B, 3g19:A, 3g1b:A, 3g1b:B, 3g3p:B, 3gq1:B, 3gw1:A, 3gw1:B
2 3o2b:C 105 79 0.5750 0.4381 0.5823 3.52e-30 1mbx:D, 3o2b:A, 3o2h:A, 1r6o:D, 1r6q:D, 2w9r:A, 2wa8:A, 2wa8:C, 2wa9:A, 2wa9:B, 2wa9:C, 2wa9:D, 2wa9:E, 2wa9:F, 2wa9:G
3 4yjx:C 84 80 0.4000 0.3810 0.4000 5.72e-16 4yjx:A, 4yjx:B, 4yjx:D, 4yka:A, 4yka:B, 4yka:C, 4yka:D
4 7d34:A 79 62 0.2625 0.2658 0.3387 0.003
5 4en4:A 310 80 0.2500 0.0645 0.2500 1.5 2ajp:A, 2ajp:B, 4en4:B, 4eoh:A, 4eoh:B, 3fhx:A, 3fhx:B, 3fhy:A, 3fhy:B, 3keu:A, 3keu:B, 8wr2:A, 8wr2:B, 2yxt:A, 2yxt:B, 2yxu:A, 2yxu:B
6 4gnk:B 769 33 0.1625 0.0169 0.3939 1.9 8emv:A, 8emw:A, 8emx:A, 4gnk:D, 4qj3:B, 4qj4:B, 4qj5:B, 7sq2:B, 8uqn:B, 8uqo:Q
7 4nzf:D 435 15 0.1250 0.0230 0.6667 5.2 4nzf:A, 4nzf:B, 4nzf:C, 4nzf:E, 4nzf:F, 4nzf:G, 4nzf:H
8 4qsh:C 1081 37 0.1250 0.0093 0.2703 5.6 4qsh:A, 4qsh:D, 4qsh:B, 4qsk:A, 4qsk:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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