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BioLiP
>protein
LYEFVGLLDAHGNVLEVNQVALEGGGITMEEIRGKPFWKARWWQISKKTEATQKRLVETASSGEFVRCDVEILGKSGGRE
VIAVDFSLLPICNEEGSIVYLLAEGRNITDKKKAEAMLALKNQEL

The query sequence (length=125) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5hww:A 128 124 0.9840 0.9609 0.9919 6.27e-88 5hwv:A, 5hwv:B, 5hww:B
2 2vqi:B 477 41 0.1040 0.0273 0.3171 0.18
3 4v8m:AY 65 67 0.1360 0.2615 0.2537 0.32 7ase:c, 5opt:c, 8ova:AY, 8ove:AY
4 5lj3:C 882 39 0.1120 0.0159 0.3590 1.7 6exn:C, 5gam:C, 5gan:C, 5lj5:C, 5lqw:B, 5mps:C, 5mq0:C, 5nrl:C
5 3bwl:A 125 37 0.0960 0.0960 0.3243 1.9 3bwl:B, 3bwl:C, 3bwl:D
6 1g6i:A 510 38 0.0880 0.0216 0.2895 2.0
7 3n4e:A 368 31 0.0880 0.0299 0.3548 2.7 3n4e:B
8 6vu9:A 631 52 0.1360 0.0269 0.3269 2.8
9 6dgj:A 102 29 0.0800 0.0980 0.3448 5.2
10 5ykw:A 106 34 0.0800 0.0943 0.2941 5.5
11 2d00:B 109 31 0.1120 0.1284 0.4516 6.0 2d00:C, 2d00:A, 2d00:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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