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BioLiP
>protein
LVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWALYFVYASGLEEDEESGLSL

The query sequence (length=54) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3jcu:W 54 54 1.0000 1.0000 1.0000 1.71e-32 3jcu:w, 7oui:W, 7oui:w, 6yp7:W
2 8c29:w 54 54 0.7778 0.7778 0.7778 2.26e-22
3 6kac:W 56 56 0.5370 0.5179 0.5179 8.66e-15 6kac:w, 6kad:W, 6kad:w
4 7pi0:W 44 44 0.4444 0.5455 0.5455 1.71e-13 7pi0:w, 7pin:w, 7pin:W1, 7pin:w1, 7piw:W, 7piw:w1
5 8bd3:W 60 60 0.4074 0.3667 0.3667 6.95e-07 8bd3:w
6 7jrg:C 388 24 0.1667 0.0232 0.3750 1.7 8bel:C, 8bel:M, 8bpx:AC, 8bpx:BC, 8bq5:AC, 8bq5:BC, 8bq6:AC, 8bq6:BC, 8e73:C, 8e73:O, 7jrg:O, 7jrp:C, 7jrp:O
7 7xnk:A 348 31 0.2222 0.0345 0.3871 3.3 7tci:A, 7tci:G, 7tci:E, 7tci:C, 4umo:A, 6v01:A, 6v01:J, 6v01:D, 6v01:G, 7xnk:C, 7xnk:E, 7xnk:G, 7xnl:A, 7xnl:C, 7xnl:E, 7xnl:G, 7xnn:B, 7xnn:G, 7xnn:C, 7xnn:E
8 5env:A 347 26 0.1667 0.0259 0.3462 8.2 5env:B, 7kc2:A, 7kc2:B, 7kc2:C, 7kc2:D, 7kcb:A, 7kcb:B, 7kcb:C, 7kcb:D, 7kcq:A, 7kcq:B, 7kcq:C, 7kcq:D, 7kjy:A, 7kjy:B, 7kjy:C, 7kjy:D, 7ntm:A, 7ntm:B, 7ntm:D, 7ntm:C, 4w6z:A, 4w6z:B, 4w6z:C, 4w6z:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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