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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
LTRDELRAKALHIPFPVEKIINLPVVDFNEMMSKEQFNEAQLALIRDIRRRGKNKVAAQNCRKRKLENIVELEQDLDHLK
DEKEKLLKEKGENDKSLHLLKKQLS

The query sequence (length=105) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7x5e:B 106 105 1.0000 0.9906 1.0000 5.28e-71 7x5e:F, 7x5f:B, 7x5f:F, 7x5g:B, 7x5g:F
2 1skn:P 74 66 0.2381 0.3378 0.3788 5.36e-10
3 5vpe:D 67 42 0.1810 0.2836 0.4524 1.38e-04 5vpe:B, 5vpf:B, 5vpf:D
4 5t01:A 62 38 0.1619 0.2742 0.4474 0.002 1a02:J, 1fos:F, 1fos:H, 5fv8:D, 2h7h:A, 2h7h:B, 1jnm:A, 1jnm:B, 1s9k:E, 5t01:B
5 2wt7:A 63 40 0.1714 0.2857 0.4500 0.008 1a02:F, 1fos:E, 1fos:G, 1s9k:D
6 2wty:B 97 83 0.1905 0.2062 0.2410 0.30 4auw:A, 4auw:B, 4auw:E, 4auw:F, 2wt7:B, 2wty:A
7 6x35:B 3801 59 0.1714 0.0047 0.3051 0.48 6x35:E, 6x35:H, 6x35:K
8 6w1n:B 3719 59 0.1714 0.0048 0.3051 0.48 6w1n:D, 6w1n:F, 6w1n:H, 6x34:B, 6x34:D, 6x34:F, 6x34:H
9 6x32:B 3798 59 0.1714 0.0047 0.3051 0.48 6x32:E, 6x32:H, 6x32:K
10 6x33:B 3816 59 0.1714 0.0047 0.3051 0.48 8drp:A, 8drp:B, 8drp:C, 8drp:D, 6x33:E, 6x33:H, 6x33:K
11 7x5e:E 101 72 0.1810 0.1881 0.2639 0.95 3a5t:A, 3a5t:B, 7x5e:A, 7x5f:A, 7x5f:E, 7x5g:A, 7x5g:E
12 4eot:A 92 77 0.1810 0.2065 0.2468 1.3 4eot:B
13 5a22:A 2002 37 0.1048 0.0055 0.2973 3.2
14 6u1x:A 2059 37 0.1048 0.0053 0.2973 3.2
15 5uba:A 261 42 0.0762 0.0307 0.1905 6.0
16 7eip:A 966 65 0.1619 0.0176 0.2615 7.0 7eiq:A, 7eir:A, 7eis:A, 7yke:A
17 5eqg:A 447 27 0.0762 0.0179 0.2963 8.9 5eqh:A, 5eqi:A
18 1nbw:A 606 24 0.1048 0.0182 0.4583 9.7 1nbw:C
19 5fgn:A 536 35 0.1429 0.0280 0.4286 10.0 4kav:A, 4kay:A, 4kay:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218