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BioLiP
>protein
LTPRFTAEEKEVLYTLFHLHEEVIDIKHRNKYSVRETWDKIVKDFNSHPHVSAMRNIKQIQKFWLNSRLRKQYPY

The query sequence (length=75) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5cqq:B 75 75 1.0000 1.0000 1.0000 3.37e-52 5cqq:A
2 7p63:C 589 40 0.2267 0.0289 0.4250 0.13 7nyr:D, 7nyu:D, 7nz1:D, 7p64:C, 7p69:C, 7p7c:C, 7p7j:C, 7p7l:C, 7p7m:C, 7z7r:C, 7z7s:C, 7z7t:C, 7z7v:C, 7z80:C, 7z83:C, 7z84:C, 7zc5:C, 7zci:C
3 7p7k:C 568 40 0.2267 0.0299 0.4250 0.14 7p7e:C
4 1w5s:B 396 22 0.1467 0.0278 0.5000 3.7 1w5s:A, 1w5t:A, 1w5t:B, 1w5t:C
5 8asd:A 1826 38 0.1333 0.0055 0.2632 3.9
6 6slf:A 398 33 0.1467 0.0276 0.3333 4.4 6slf:B, 6slf:C, 6slf:D
7 7alp:U 1935 38 0.1333 0.0052 0.2632 5.1
8 8r6y:A 1991 38 0.1333 0.0050 0.2632 5.1 8as7:A, 8r6w:A, 6xya:B
9 5lnk:d 314 45 0.1467 0.0350 0.2444 6.8 6q9d:A9, 6qa9:A9, 6qbx:A9, 6qc2:A9, 6qc3:A9, 6qc4:A9, 6qc5:A9, 6qc6:A9, 6qc7:A9, 6qc8:A9, 6qc9:A9, 6qca:A9, 6qcf:A9, 7r45:P, 7r46:P, 7r47:P, 7r48:P, 7r4c:P, 7r4d:P, 7r4f:P, 7r4g:P, 7zd6:d, 7zdj:d, 7zdp:d, 6zk9:d, 6zkd:d, 6zke:d, 6zkf:d, 6zkh:d, 6zki:d, 6zkj:d, 6zkl:d, 6zkm:d, 6zkn:d, 6zkp:d, 6zkq:d, 6zkr:d, 6zks:d, 6zkt:d, 6zku:d, 6zkv:d
10 3c41:J 242 31 0.1467 0.0455 0.3548 6.8 3c41:K, 3c4j:A, 3c4j:B, 2olj:A, 2olj:B, 2olk:A, 2olk:B, 2olk:C, 2olk:D, 2q0h:A, 2q0h:B
11 8uc6:B 148 44 0.1733 0.0878 0.2955 7.8 8uc6:C
12 4ymu:J 240 28 0.1333 0.0417 0.3571 9.6 4ymu:A, 4ymv:J, 4ymv:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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