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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVPDVVQEAFIKAYRALDSFRGDSAFYTWLYRIAVNTAKN
YLVAQGRRLEL

The query sequence (length=91) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6jbq:F 186 88 0.9670 0.4731 1.0000 2.10e-60 2h27:A, 2h27:D, 4lup:A, 4lup:C, 2map:A
2 5or5:A 95 91 0.9341 0.8947 0.9341 4.90e-57
3 6in7:B 174 87 0.6703 0.3506 0.7011 6.84e-40
4 4cxf:A 154 92 0.3846 0.2273 0.3804 3.24e-15
5 6kop:F 159 41 0.1978 0.1132 0.4390 1.78e-05 6koq:F
6 6jcy:F 164 42 0.1978 0.1098 0.4286 2.65e-05
7 6jcx:F 186 41 0.1978 0.0968 0.4390 2.78e-05 6kon:F, 6koo:F, 5zx2:F
8 7l7b:F 272 76 0.2857 0.0956 0.3421 0.097
9 7ckq:F 272 77 0.2308 0.0772 0.2727 0.65 7f75:F, 8x6f:E
10 4iaw:A 180 48 0.1648 0.0833 0.3125 4.4 3dsz:A, 3dsz:B, 4iaw:B, 4iaw:C, 4iax:A
11 7msc:Y 68 32 0.1319 0.1765 0.3750 5.6 7f0d:Y, 7kgb:Y, 7msh:Y, 7msm:Y, 7msz:Y, 7mt2:Y, 7mt3:Y, 7mt7:Y, 7sfr:Y, 5v7q:Y, 5v93:Y
12 5dx6:B 557 38 0.1429 0.0233 0.3421 7.1 5d6r:B, 5d6r:M, 5dx6:A, 1ozf:A, 1ozf:B, 1ozg:A, 1ozg:B, 1ozh:A, 1ozh:B, 1ozh:C, 1ozh:D, 5wdg:A, 5wdg:B
13 6g1y:B 493 50 0.1319 0.0243 0.2400 7.3 6g1y:A, 6g1z:A, 6g1z:B, 6g20:A, 6g20:B
14 5swc:A 223 25 0.1099 0.0448 0.4000 7.5 5swc:B, 5swc:C, 5swc:D, 5swc:E, 5swc:F
15 4b45:A 334 37 0.1758 0.0479 0.4324 9.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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