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BioLiP
>protein
LSVPHLVVEAGFAAVNCGMRAEMHDILNALPDWLDDPDQVTRCEAILLFGLGRQRAAAARLAMLPPDDCLPLRALLT

The query sequence (length=77) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7y6c:E 77 77 1.0000 1.0000 1.0000 3.95e-51 7y6c:B
2 6sup:A 2128 59 0.2208 0.0080 0.2881 0.71
3 7paj:9 393 19 0.0909 0.0178 0.3684 1.6 7pak:9, 7pha:9, 7pi9:9, 7pip:9
4 6njw:A 208 46 0.2078 0.0769 0.3478 1.7 6njv:A
5 1jd5:A 105 35 0.1558 0.1143 0.3429 2.1 1jd4:A, 1jd4:B, 1jd6:A, 1q4q:G, 1q4q:I, 1q4q:F, 1q4q:H, 1q4q:J, 1q4q:A, 1q4q:C, 1q4q:D, 1q4q:B, 1q4q:E
6 1id8:A 137 25 0.1299 0.0730 0.4000 3.5
7 3kh1:A 196 78 0.3506 0.1378 0.3462 3.6
8 7qbz:A 638 26 0.1558 0.0188 0.4615 5.0 7qc0:A
9 7ooc:H 128 21 0.0909 0.0547 0.3333 5.2 7p6z:H, 7pah:H, 7pai:H, 7paj:H, 7pak:H, 7pal:H, 7pam:H, 7pan:H, 7pao:H, 7paq:H, 7par:H, 7pas:H, 7ph9:H, 7pha:H, 7phb:H, 7phc:H, 7pi8:H, 7pi9:H, 7pia:H, 7pib:H, 7pic:H, 7pio:H, 7pip:H, 7piq:H, 7pir:H, 7pis:H, 7pit:H
10 3nmn:D 276 29 0.1429 0.0399 0.3793 5.3 3kdj:B, 3nmn:B
11 2v45:A 723 29 0.1299 0.0138 0.3448 5.7 2jim:A, 2jio:A, 2jip:A, 2jiq:A, 2jir:A, 2nap:A, 2v3v:A
12 5x7u:A 546 73 0.2597 0.0366 0.2740 5.9
13 6n7e:C 302 15 0.1039 0.0265 0.5333 6.4 6n7e:B
14 6n7e:D 319 15 0.1039 0.0251 0.5333 6.5 4iy0:A, 5lxq:A, 5lxq:H, 6n7e:A, 4p1g:A, 4p1o:A, 4p1o:B
15 8rpl:B 630 25 0.1558 0.0190 0.4800 7.2 8rpk:A, 8rpk:B, 8rpk:C, 8rpk:D, 8rpl:A, 8rpl:C, 8rpl:D
16 8uu5:i 127 25 0.0909 0.0551 0.2800 7.4 7nhn:j, 8uu4:i, 8uu6:i, 8uu7:i, 8uu8:i, 8uu9:i

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218