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BioLiP
>protein
LSTDAERELANIWATVLDIPIGTISASDNFFFRGGHSIDAMKASALGRAAGMSFGVADIFDHPVLSELAS

The query sequence (length=70) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5ejd:G 75 70 1.0000 0.9333 1.0000 3.68e-46 5ejd:E, 5ejd:K, 5ejd:M, 5ejd:O
2 8jbr:A 1023 68 0.3857 0.0264 0.3971 5.04e-09
3 7ly7:A 908 64 0.3429 0.0264 0.3750 5.23e-07
4 6mg0:B 1687 69 0.3571 0.0148 0.3623 6.25e-07
5 6mfz:A 1789 67 0.3143 0.0123 0.3284 9.26e-07 5es7:A, 5es8:A, 5es8:B, 5es9:A, 6mfw:A, 6mfx:A, 6mfy:A, 6mg0:A, 6ulz:A
6 6mfz:A 1789 67 0.3000 0.0117 0.3134 2.41e-04 5es7:A, 5es8:A, 5es8:B, 5es9:A, 6mfw:A, 6mfx:A, 6mfy:A, 6mg0:A, 6ulz:A
7 4r0m:A 637 68 0.3000 0.0330 0.3088 2.66e-06 4r0m:B
8 4mrt:C 77 66 0.3286 0.2987 0.3485 2.75e-05
9 2vsq:A 1273 68 0.3000 0.0165 0.3088 1.73e-04
10 5isx:A 529 63 0.2857 0.0378 0.3175 2.47e-04 5isx:B
11 8g3i:B 515 69 0.3429 0.0466 0.3478 6.87e-04
12 5u89:A 1039 64 0.2857 0.0192 0.3125 0.002
13 7en2:B 1410 65 0.3571 0.0177 0.3846 0.003 7emy:A, 7emy:B, 7en1:A, 7en1:B, 7en2:A
14 8w2d:A 322 43 0.2429 0.0528 0.3953 0.021 8w2d:B
15 4dg9:A 575 56 0.2571 0.0313 0.3214 0.026 4dg8:A
16 6vtj:A 472 67 0.3286 0.0487 0.3433 0.029
17 6ltb:A 928 48 0.2286 0.0172 0.3333 0.55 6ltc:A, 6ltd:A, 6ltd:B
18 4zxh:A 1314 65 0.2714 0.0145 0.2923 0.86 4zxi:A
19 7eo3:A 282 26 0.1429 0.0355 0.3846 1.2
20 7dog:A 319 36 0.1714 0.0376 0.3333 1.3 7dog:B
21 8umv:A 546 57 0.2000 0.0256 0.2456 1.6 8umw:A, 8umy:A, 8un0:A
22 6n8e:A 1332 65 0.2714 0.0143 0.2923 3.9
23 3v76:A 390 47 0.2143 0.0385 0.3191 4.7
24 6tit:A 432 74 0.3143 0.0509 0.2973 5.1 5i2m:C, 5oyl:A
25 6u7l:A 460 21 0.1429 0.0217 0.4762 7.1 6u7l:B, 6u7l:C, 6u7l:D
26 5ja2:A 1238 20 0.1571 0.0089 0.5500 8.1 5ja1:A, 5t3d:A
27 3sfw:A 461 33 0.2000 0.0304 0.4242 8.1 3sfw:B
28 3g5t:A 299 19 0.1429 0.0334 0.5263 8.2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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