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BioLiP
>protein
LSASATELLQDYMLTLRTKLSSQEIQQFAALLHEYRNGASIHEFCINLRQLYGDSRKFLLLGLRPFIPEKDSQHFENFLE
TIGVKDLE

The query sequence (length=88) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4yl6:A 88 88 1.0000 1.0000 1.0000 4.29e-61
2 1ord:A 730 80 0.2841 0.0342 0.3125 0.081 1c4k:A, 1ord:B
3 8om2:2 102 36 0.1591 0.1373 0.3889 0.69 8d8j:2, 8d8k:2, 8d8l:2, 5mrc:22, 5mre:22, 5mrf:22, 8om3:2, 8om4:2
4 5v5z:A 488 25 0.1364 0.0246 0.4800 4.6 5fsa:A, 5fsa:B, 5tz1:A, 5tz1:B
5 6zdp:A 683 54 0.1591 0.0205 0.2593 7.1
6 8gs8:A 614 41 0.1705 0.0244 0.3659 9.7 3abv:A, 3ae1:A, 3ae2:A, 3ae3:A, 3ae4:A, 3ae5:A, 3ae6:A, 3ae7:A, 3ae8:A, 3ae9:A, 3aea:A, 3aeb:A, 3aec:A, 3aed:A, 3aee:A, 3aef:A, 3aeg:A, 8dyd:A, 8dye:A, 2fbw:A, 2fbw:N, 2h88:A, 2h88:N, 2h89:A, 6myo:A, 6myp:A, 6myq:A, 6myr:A, 6mys:A, 6myt:A, 6myu:A, 3sfd:A, 3sfe:A, 6vax:A, 6vax:C, 2wqy:A, 2wqy:N, 1yq3:A, 1yq4:A, 4ytp:A, 4yxd:A, 1zoy:A, 1zp0:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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