Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
LQGEQYQEIIEIFGDGTDYQWTLDAEEEMEQPTSLADVFEPSELKEKMLTDEDNVIRVTDLPERFQAYRKSIKNYKLSDV
DYSNERDWIVEQLKLEKRDFLQHLTQAHSSVAHLEEKFEASVKKIVDFIAIESFEVPFIWNHRRDYALHTYNDDSNNTII
VKLLNEDDLWRIVQLDLDYHSIHDKKAALSSIYKQLDLDVVDPTYEEFFGSARTLSELQDIDDYLTFNYSSQVKNLTAVM
KRKYSKYAIYDRIRQDAIYPVVQSIANISQMRENLAQSKRLHQVEDPIESPMDMIADIMSTEKDKTTFISSEKAYQAVKQ
FFSEQLSYEPFIRKTIRTAFQSFGVINIELTERGKLQIEPESPYFDFKYAKNRPISALTATPDLYLRMIQAENDGLVNIK
VELPMLSTVVDHFYNILKSDGTSEISEKWNALRNDAWKQSLDKLIPLVQLNVKESIRRDCERVLYFQVKNSFTKKIDQAP
YQPPTYAKGTIPRVLTLSFGEGNRGDAVLGVFMDDSGDVKSQIKFDEDFQSRDFSDSLTRYIKSNNINPDIIGISGFNIH
TKKLFDKVNELVNEERLTIEYDNSDKHLIRVIYVNDETARLYQHSSKSSAEYPNRPQLAKYCIGLAKYIQSPLLEYLALD
ESMYSLHIHKHQNLLPREKLIDAVQTSIVDIVNLVGVDINEAVRAPYHALALPYVCGLGPRKAAGLIQSIQRIGSNLVNR
AHLITEQLTSKTVFLNMASFVYIVFDPDVERNPQGEMDLLDSTRIHPEDYSLARKMAADALDIEDIDDDDESAMRNAIYE
MVFPRSPPKDEDDLTFKLDELILDDYATELERKHQLKKRSTLQIIKEELQSRYREIRRDFHILNEAEIFQLLTRETVDSF
RKGMVIPVYVRKVESSYMSVSTQSLIAGNIQRQDILEPNDRRDPREVYSVGQTVRACILDVDYYNFKCQLSLLRQFTENQ
VAGLNVNRNPKFWDIESENRDRQEEIDKQREESRESRVIKHPFFHNMKSKEAEDYLAARPVGDVVIRPSSKGSNHITISW
KVAPQLYQHIDVLEENKDDANAIGRVLLVGKYRYHDLDELLVEYVNNVANKVELMVSHDKFMSDSLDYVKEWLERYSKAN
GNRSHYIFTFNRKAPGWFFLLFKLNPTSEIKIWNVKALPDGYLLANNVYPDTNSLCNGFKTLMSSRR

The query sequence (length=1187) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7xn7:m 1187 1187 1.0000 1.0000 1.0000 0.0 7xse:m, 7xsx:m, 7xsz:m, 7xt7:m, 7xtd:m, 7xti:m
2 7oop:M 810 925 0.2089 0.3062 0.2681 9.02e-80 7opc:M, 7opd:M
3 6qtc:A 195 189 0.0725 0.4410 0.4550 7.90e-53
4 5vkl:A 202 189 0.0708 0.4158 0.4444 1.76e-51
5 2cia:A 98 83 0.0194 0.2347 0.2771 0.36
6 2ilu:A 477 84 0.0227 0.0566 0.3214 0.46 2imp:A, 2opx:A
7 1k78:A 124 62 0.0143 0.1371 0.2742 4.6 1k78:I, 1k78:E, 1mdm:A
8 8dwe:A 355 63 0.0152 0.0507 0.2857 6.2 8dvp:A, 8dvy:A, 8dw0:A, 8dw4:A, 8dw7:A, 8dw7:D, 8dwd:A, 8dwe:D, 8dwf:A, 8dwf:D, 3g0q:A, 5kn8:A, 5kn9:A, 6q0c:A, 1rrq:A, 1rrs:A, 6u7t:A, 1vrl:A, 4yoq:A, 4yph:A, 4ypr:A, 4ypr:B
9 5f3m:A 120 109 0.0219 0.2167 0.2385 6.4 5f3m:B, 5far:A, 5far:B, 5far:C, 5far:D, 5far:E, 5far:H, 5far:F, 5far:G, 8sv5:A, 8sv5:G, 8sv5:B, 8sv5:H, 8sv5:C, 8sv5:D, 8sv5:F, 8sv5:E
10 5gjh:A 97 58 0.0152 0.1856 0.3103 7.5 5gjh:C

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218