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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
LQAIAPEVAQSLAEFFAVLADPNRLRLLSLLARSELSVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRHVYYQLQDHHIV
ALYQNALDHLQES

The query sequence (length=93) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1r23:A 104 97 0.9785 0.8750 0.9381 1.56e-57 1r22:A, 1r22:B, 1r23:B
2 6cdb:A 97 90 0.3441 0.3299 0.3556 1.86e-13 6cda:A, 6cdb:B, 4ggg:A, 4ggg:B, 2m30:A, 2m30:B, 1r1v:A
3 4omy:A 97 78 0.3333 0.3196 0.3974 3.09e-10 4omy:B, 4omy:C, 4omy:D, 4on0:A, 4on0:B, 4on0:C, 4on0:D
4 1u2w:B 107 87 0.3011 0.2617 0.3218 3.19e-07 1u2w:A, 1u2w:C
5 2jsc:B 97 73 0.3118 0.2990 0.3973 3.26e-06 2jsc:A
6 1u2w:D 94 83 0.2796 0.2766 0.3133 4.82e-05
7 4kdp:A 151 40 0.1505 0.0927 0.3500 0.19 4ejv:A, 4ejv:B, 4ejw:A, 4ejw:B, 4kdp:B, 4kdp:C, 4kdp:D, 3kp2:A, 3kp2:B, 3kp3:B, 3kp4:A, 3kp4:B, 3kp5:A, 3kp5:B
8 2pij:A 59 27 0.1183 0.1864 0.4074 1.3
9 2vxx:B 173 44 0.1398 0.0751 0.2955 1.4 2vxx:A, 2vxx:D, 2vxx:C
10 8y6u:H 92 40 0.1720 0.1739 0.4000 1.5 8y6u:J
11 5b6a:A 288 43 0.1828 0.0590 0.3953 3.8
12 8pw0:A 137 47 0.1935 0.1314 0.3830 4.4
13 6rtg:A 503 26 0.1183 0.0219 0.4231 5.1
14 8c3a:w 199 47 0.1613 0.0754 0.3191 5.1 8c3a:BJ, 8cq7:w, 8cq7:BJ, 8cqw:w, 8cqw:BJ, 8cre:w, 8cre:BJ, 8oeq:w, 8oeq:BJ, 7pzy:w, 7q08:w, 7q0f:w, 7q0p:w, 7q0r:w, 8q5i:w
15 8qto:A 234 49 0.1075 0.0427 0.2041 5.4 5cvr:A, 5e44:A
16 4x2h:A 192 63 0.1935 0.0938 0.2857 7.2 4x2o:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417