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BioLiP
>protein
LQAIAPEVAQSLAEFFAVLADPNRLRLLSLLARSELCVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRKQGRHVYYQLQD
HHIVALYQNALDHLQEC

The query sequence (length=97) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1r23:A 104 97 1.0000 0.9327 1.0000 1.33e-65 1r22:A, 1r22:B, 1r23:B
2 6cdb:A 97 90 0.3402 0.3402 0.3667 1.98e-17 6cda:A, 6cdb:B, 4ggg:A, 4ggg:B, 2m30:A, 2m30:B, 1r1v:A
3 4omy:A 97 88 0.3196 0.3196 0.3523 1.22e-12 4omy:B, 4omy:C, 4omy:D, 4on0:A, 4on0:B, 4on0:C, 4on0:D
4 1u2w:B 107 87 0.3196 0.2897 0.3563 1.77e-12 1u2w:A, 1u2w:C
5 2jsc:B 97 73 0.2990 0.2990 0.3973 3.14e-08 2jsc:A
6 6o8m:A 95 86 0.2680 0.2737 0.3023 7.34e-07
7 1u2w:D 94 87 0.2784 0.2872 0.3103 1.79e-05
8 4kdp:A 151 70 0.1959 0.1258 0.2714 0.063 4ejv:A, 4ejv:B, 4ejw:A, 4ejw:B, 4kdp:B, 4kdp:C, 4kdp:D, 3kp2:A, 3kp2:B, 3kp3:B, 3kp4:A, 3kp4:B, 3kp5:A, 3kp5:B
9 7mq8:LW 453 56 0.1753 0.0375 0.3036 0.74 7mq9:LW
10 7mqa:LW 452 56 0.1753 0.0376 0.3036 0.86
11 8y6u:H 92 53 0.1959 0.2065 0.3585 1.0 8y6u:J
12 2pij:A 59 32 0.1340 0.2203 0.4062 1.1
13 9bh5:AK 93 41 0.1649 0.1720 0.3902 2.3 9cai:AK
14 1f9w:A 300 54 0.1753 0.0567 0.3148 4.3 1f9w:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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