Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
LPPLRLAIACDDAGVSYKEALKAHLSDNPLVSSITDVGVTSTTDKTAYPHVAIQAAQLIKDGKVDRALMICGTGLGVAIS
ANKVPGIRAVTAHDTFSVERAILSNDAQVLCFGQRVIGIELAKRLAGEWLTYRFDQKSASAQKVQAISDYEKKFVEVN

The query sequence (length=158) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3sgw:A 158 158 1.0000 1.0000 1.0000 1.10e-115
2 3hee:A 148 151 0.3291 0.3514 0.3444 1.22e-27 3hee:B, 3ph3:A, 3ph3:B, 3ph4:A, 3ph4:B
3 3k7p:A 153 110 0.2025 0.2092 0.2909 5.43e-18 3k7p:B, 3k7s:A, 3k7s:B, 3k7s:C, 3k7s:D, 3k8c:A, 3k8c:B, 3m1p:A, 3m1p:B
4 4lfl:B 172 120 0.2215 0.2035 0.2917 5.58e-12 4lfl:D, 4lfm:B, 4lfm:D, 4lfn:B, 4lfn:D
5 6mu0:A 152 153 0.2658 0.2763 0.2745 1.20e-11
6 2bes:C 158 152 0.2468 0.2468 0.2566 1.69e-07 2bes:A, 2bes:B, 2bes:D, 2bes:E, 2bet:A, 2bet:B, 2bet:C, 2bet:D, 2bet:E, 1usl:A, 1usl:B, 1usl:C, 1usl:D, 1usl:E, 2vvo:A, 2vvo:B, 2vvo:C, 2vvo:D, 2vvo:E, 2vvp:A, 2vvp:B, 2vvp:C, 2vvp:D, 2vvp:E, 2vvq:A, 2vvq:B, 2vvq:C, 2vvq:D, 2vvq:E
7 3t7s:A 246 91 0.1772 0.1138 0.3077 0.17 3t7s:B, 3t7s:C, 3t7s:D, 3t7t:A, 3t7t:B, 3t7t:C, 3t7t:D
8 4lfl:A 142 127 0.1582 0.1761 0.1969 0.19 4lfl:C, 4lfm:A, 4lfm:C, 4lfn:A, 4lfn:C
9 5mmi:I 137 61 0.1076 0.1241 0.2787 3.6 5mmm:I
10 7pvn:B 990 23 0.0886 0.0141 0.6087 5.0 7sol:C
11 7sol:A 1011 23 0.0886 0.0138 0.6087 5.2 7pvn:A
12 6yxx:E2 369 26 0.0696 0.0298 0.4231 5.8
13 6tg3:D 327 19 0.0759 0.0367 0.6316 5.8 5l9g:A, 5l9g:B, 5l9i:A, 5l9i:B, 5l9l:A, 5l9l:B, 6tg2:A, 6tg2:B, 6tg2:C, 6tg2:D, 6tg3:A, 6tg3:B, 6tg3:C
14 1yqq:A 273 58 0.1266 0.0733 0.3448 6.1 1yqq:B, 1yqq:C, 1yqu:A, 1yqu:B, 1yqu:C, 1yr3:A, 1yr3:B, 1yr3:C, 1yr3:D, 1yr3:E, 1yr3:F
15 7yi2:A 506 36 0.0759 0.0237 0.3333 7.4 7yi5:A
16 6dc6:C 996 33 0.0949 0.0151 0.4545 7.9 6dc6:A, 1z7l:A, 1z7l:B, 1z7l:C

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218