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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
LPNGVAIFKCTVPNTIALTFDDGPHIWTENAVNQLEAAGMKGTFFLNGKNFGELKNYVPLLKRMRANRHQIGSHTWDHPY
LTQLSDAAVRKQMTDFENELRRLIGYYPTYMRPPYFDYNAKTLAVMKELGYRVIHADLDTNDWKFDMPASIAAFKAGVAN
NRIVLAHDVHETTVKTLLPAMIKEVQRLKLKAVTVGECLGEPYAYWYRVTPR

The query sequence (length=212) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8hfa:A 212 212 1.0000 1.0000 1.0000 3.96e-162 8hfa:B, 8hfa:C, 8hfa:D, 8hfa:E
2 7bly:A 216 214 0.4340 0.4259 0.4299 1.28e-55
3 2y8u:B 212 213 0.4198 0.4198 0.4178 4.33e-50 2y8u:A
4 2iw0:A 226 220 0.4151 0.3894 0.4000 3.66e-49
5 8he1:A 225 206 0.3491 0.3289 0.3592 6.58e-39 8he2:A, 8he4:A, 8hf9:A
6 2c1g:A 384 186 0.3396 0.1875 0.3871 4.20e-30 2c1i:A
7 5o6y:A 214 179 0.2689 0.2664 0.3184 2.57e-23 5o6y:B, 5o6y:C, 5o6y:D
8 6h8l:B 206 185 0.2877 0.2961 0.3297 4.27e-22 6h8l:A, 6h8n:A, 6h8n:B
9 2cc0:A 192 182 0.2406 0.2656 0.2802 2.03e-19 2cc0:B
10 5n1j:A 206 203 0.2783 0.2864 0.2906 7.51e-19 5n1j:B, 5n1j:C, 5n1j:D, 5n1p:A, 5n1p:D, 5n1p:B, 5n1p:C, 5nc6:A, 5nc6:B, 5nc6:C, 5nc6:D, 5nc9:A, 5nc9:B, 5nc9:C, 5nc9:D, 5ncd:A, 5ncd:B, 5ncd:C, 5ncd:D, 5nek:A, 5nek:B, 5nek:C, 5nek:D, 5nel:A, 5nel:B, 5nel:C, 5nel:D
11 2j13:A 207 166 0.2547 0.2609 0.3253 2.94e-18
12 2c71:A 205 161 0.2264 0.2341 0.2981 2.35e-17 2c79:A
13 7ax7:A 205 191 0.2547 0.2634 0.2827 7.21e-16
14 5jp6:A 339 190 0.2217 0.1386 0.2474 1.36e-08
15 3rxz:C 287 119 0.1368 0.1010 0.2437 4.47e-04 3rxz:A, 3rxz:B, 3rxz:D
16 4nyu:A 406 69 0.1038 0.0542 0.3188 0.002 4ny2:A, 4ny2:B, 4nyy:A, 4nyy:B, 4nyy:C, 4nyy:D, 4nz1:A, 4nz1:B, 4nz3:A, 4nz3:B, 4nz4:A, 4nz4:B, 4oui:A, 4oui:B
17 2w3z:A 238 193 0.2311 0.2059 0.2539 0.002
18 5jmu:A 220 180 0.2028 0.1955 0.2389 0.002
19 3wx7:A 402 69 0.0991 0.0522 0.3043 0.020 3wx7:B
20 2vyo:A 206 204 0.2358 0.2427 0.2451 0.16
21 4y7e:A 302 67 0.0943 0.0662 0.2985 0.33 4y7e:B
22 6dq3:A 227 73 0.0896 0.0837 0.2603 0.42 6dq3:B
23 6d50:B 840 31 0.0660 0.0167 0.4516 0.83 6d50:A, 6nzg:A, 6nzg:B, 5uj6:A, 5uj6:B
24 6f0x:B 398 32 0.0660 0.0352 0.4375 3.1 6f0x:A, 6f0x:C, 6f0x:D, 6f0x:E, 7l9p:A, 7l9p:B, 7l9p:C, 7l9p:D, 7l9p:E
25 5vqa:A 368 32 0.0660 0.0380 0.4375 3.3 5wc2:A
26 2vs4:A 288 48 0.0708 0.0521 0.3125 3.6 1g8o:A, 1g93:A, 1gwv:A, 1gwv:B, 1gww:A, 1gww:B, 1gx0:A, 1gx0:B, 1gx4:A, 1gx4:B, 2jcj:A, 2jck:A, 1k4v:A, 1k4v:B, 5nrb:A, 5nrb:B, 5nrd:A, 5nrd:B, 5nre:A, 1o7o:A, 1o7o:B, 1o7q:A, 1o7q:B, 2vfz:A, 2vfz:B, 2vs3:A, 2vs3:B, 2vs4:B, 2vs5:A, 2vs5:B, 2vxl:A, 1vzt:A, 1vzt:B, 1vzu:A, 1vzu:B, 1vzx:A, 1vzx:B, 2wgz:A, 2wgz:B
27 7kx9:A 734 127 0.1462 0.0422 0.2441 4.3 7kx7:A, 7yfq:A, 7yg6:A
28 7v02:F 650 43 0.0660 0.0215 0.3256 5.8
29 7v00:F 695 43 0.0660 0.0201 0.3256 6.0 7v01:F
30 3hkz:A 836 51 0.0566 0.0144 0.2353 6.4 3hkz:I, 2y0s:A, 2y0s:W
31 7ela:A 1402 76 0.0991 0.0150 0.2763 6.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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