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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
LPILGVLGGMGPVVTAEFLKSIYEYNPFIDKEQESPNVIVFSFPSAPDRTGSIDSGKEREFIDFIQVNLEHLNKLADCIV
IGSCTAHYALPQIPENLKDKLISLIKIADQELQEYNEPTLLLASTGTYQKKLFQEGCTTADLIISLSESDQKLIHEMIYK
VLKRGHDPLSILRDIEALLEKYNTRSYISGSTEFHLLTKSLKLKGIDSIKAIDPLSTIAQNFSQLII

The query sequence (length=227) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5wxy:A 227 227 1.0000 1.0000 1.0000 4.17e-167 5wxz:A, 5xni:A, 5xnj:A, 5xnk:A
2 2dx7:A 228 227 0.3216 0.3202 0.3216 6.04e-22
3 3s7z:B 235 222 0.2996 0.2894 0.3063 6.31e-18
4 7byi:A 463 45 0.0661 0.0324 0.3333 0.80 8aql:A, 8aql:B, 8aql:C, 8aql:D, 9box:A, 9box:C, 9box:B, 9box:D, 7byi:B, 8fjt:A, 8fjt:B, 8fju:A, 8fju:B, 8gks:A, 8gks:B, 8gkt:A, 8gkt:B, 8gku:A, 8gku:B, 8gkw:A, 8gkw:B, 8gky:A, 8gky:B, 8gkz:A, 8gkz:B, 6m5o:A, 6m5o:B, 6qvg:A, 6qvg:B, 6qvl:A, 6qvl:B, 8t4o:A, 8t4o:B, 8t4p:A, 8t4p:B, 8tlc:A, 8tlc:B, 5v7i:A, 5v7i:B
5 1zru:C 254 71 0.1057 0.0945 0.3380 1.8 1zru:A, 1zru:B
6 1sgl:A 206 22 0.0441 0.0485 0.4545 2.3
7 7xn7:V 106 27 0.0396 0.0849 0.3333 3.1 6ir9:V, 6j4w:V, 6j4x:V, 6j4y:V, 6j4z:V, 6j50:V, 6j51:V, 8jh2:V, 7wbv:V, 7wbw:V, 7wbx:V, 5xon:V, 7xse:V, 7xsx:V, 7xsz:V, 7xt7:V, 7xtd:V, 7xti:V
8 5o25:B 323 34 0.0617 0.0433 0.4118 3.4 5o1u:A, 5o1u:B, 5o25:A, 5o4z:A, 5o58:A, 5o70:A, 5o7f:A, 5o7f:B
9 8ye9:B 89 36 0.0529 0.1348 0.3333 3.7
10 6q7i:A 770 97 0.1145 0.0338 0.2680 3.9 6q7j:A, 6q7j:B
11 7btb:m 469 67 0.0881 0.0426 0.2985 5.2 7bt6:m, 6ft6:m, 3jct:m, 6m62:m, 7oh3:m, 7ohq:m, 7oht:m, 7ug6:m, 7uoo:m, 7uqb:m, 7uqz:m, 7uui:m, 7v08:m, 6ylg:m, 6ylh:m
12 6smn:D 480 55 0.0837 0.0396 0.3455 6.1 6smn:A, 6smn:B, 6smn:C, 6smw:A, 6smw:B, 6smw:C, 6smw:D
13 3q87:B 164 68 0.1013 0.1402 0.3382 7.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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