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BioLiP
>protein
LNCGQVDSKMKPCLTYVQGGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHNLNLNNAASIPSKCNVNVPYT
ISPDIDCSRIY

The query sequence (length=91) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3gsh:A 91 91 1.0000 1.0000 1.0000 2.62e-63 3gsh:B, 1jtb:A, 1mid:A
2 1bwo:A 90 90 0.7143 0.7222 0.7222 1.74e-45 1bwo:B, 1cz2:A
3 1rzl:A 91 90 0.6264 0.6264 0.6333 7.44e-39 1uvc:A, 1uvc:B
4 1fk6:A 93 91 0.5604 0.5484 0.5604 1.00e-33 1fk7:A
5 5lqv:A 93 90 0.5165 0.5054 0.5222 1.95e-30
6 6iwo:A 92 90 0.4176 0.4130 0.4222 1.74e-20 6iwo:B, 6iwp:A, 5tvi:W, 7w9a:A
7 1qf9:A 194 38 0.1758 0.0825 0.4211 0.20 1uke:A, 2ukd:A, 3ukd:A, 4ukd:A, 5ukd:A
8 1n89:A 67 25 0.1099 0.1493 0.4000 3.6 1tuk:A
9 2vzs:A 857 41 0.1648 0.0175 0.3659 6.6 2vzs:B, 2vzt:A, 2vzt:B, 2vzu:A, 2vzu:B, 2vzv:A, 2vzv:B, 2x05:A, 2x05:B, 2x09:A, 2x09:B
10 6aon:A 473 12 0.0879 0.0169 0.6667 7.3 6aon:B
11 8iuf:A9 484 53 0.1648 0.0310 0.2830 9.6 8j9h:A9, 8j9i:A9, 8j9j:A9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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