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BioLiP
>protein
LNAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTYFP

The query sequence (length=60) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6sqr:A 69 59 0.9667 0.8406 0.9831 6.81e-38 7ai0:AAA, 7ai0:DDD, 7ai1:AAA, 7ai1:DDD, 2hdp:A, 2hdp:B, 5mnj:C, 5mnj:G, 6sqo:A, 6sqo:D, 6sqp:A, 6sqp:B, 6sqp:C, 6sqp:D, 6sqr:D, 6sqr:G, 6sqr:J, 6sqs:A, 6sqs:D, 2vje:A, 2vje:C, 2vjf:A, 2vjf:C
2 7ahz:GGG 60 59 0.8667 0.8667 0.8814 1.67e-35 7ahy:AAA, 7ahy:BBB, 7ahz:AAA, 7ahz:DDD, 7ahz:JJJ
3 7ah2:AAA 58 56 0.7667 0.7931 0.8214 1.38e-30 7ah2:BBB
4 7mla:A 67 58 0.4333 0.3881 0.4483 2.16e-18 5mnj:D, 5mnj:H, 2vje:B, 2vje:D, 2vjf:B, 2vjf:D
5 3t6p:A 330 52 0.3167 0.0576 0.3654 0.005 3d9t:A, 3d9t:B, 3d9u:A, 8dsf:A, 8dsf:B, 8dsf:C, 8dsf:D, 8dso:D, 4eb9:A, 4eb9:B, 4eb9:C, 4eb9:D, 6exw:A, 6exw:C, 6hpr:A, 4hy4:A, 4hy4:B, 4hy5:A, 4hy5:B, 4lge:A, 4lge:B, 4lgu:A, 4lgu:B, 5m6n:A, 5m6n:B, 4mti:A, 4mti:B, 3mup:A, 3mup:B, 3mup:C, 3mup:D, 4mu7:A, 4mu7:B, 3oz1:A, 3oz1:B, 3oz1:C, 3oz1:D, 1qbh:A, 7trm:A, 3uw4:A, 6w74:A, 6w7o:C, 6w7o:D, 6w8i:F, 6w8i:D, 6w8i:E
6 3eb5:A 65 59 0.3500 0.3231 0.3559 0.011 3eb6:A
7 6k2k:A 57 52 0.3000 0.3158 0.3462 0.029 6m2c:E, 6m2c:F, 6m2c:G, 6m2c:H, 6m2d:A, 6m2d:B, 6m2d:C, 6m2d:D, 6m2d:E, 6m2d:F
8 2yho:E 70 36 0.2167 0.1857 0.3611 0.059 2yhn:A, 2yhn:B, 2yho:A, 2yho:C, 2yho:G
9 1chc:A 68 57 0.2667 0.2353 0.2807 0.14
10 2jrp:A 81 43 0.2833 0.2099 0.3953 0.19
11 5zi6:A 55 32 0.2000 0.2182 0.3750 0.44 5zi6:B, 5zi6:C, 5zi6:D, 5zi6:E, 5zi6:F, 5zi6:G, 5zi6:H
12 6f98:A 78 27 0.1667 0.1282 0.3704 0.51
13 4auq:B 57 59 0.3333 0.3509 0.3390 1.2 4auq:E
14 6skz:A 2638 27 0.2000 0.0045 0.4444 1.6 6sl0:A, 6sl0:B
15 4df9:C 405 28 0.1667 0.0247 0.3571 1.9 4df9:A, 4df9:B, 4df9:D, 4df9:E, 4df9:F
16 3p1v:A 406 30 0.1500 0.0222 0.3000 1.9 3p1v:B
17 3lrq:D 84 27 0.1667 0.1190 0.3704 2.4 3lrq:A, 3lrq:B, 3lrq:C
18 2ecg:A 75 45 0.3000 0.2400 0.4000 2.9 4ic2:A, 4ic2:B, 4ic3:A, 4ic3:B, 5o6t:A, 5o6t:B, 8w59:A, 8w59:B, 8w5a:A, 8w5a:B
19 4axd:A 433 9 0.1000 0.0139 0.6667 3.1 4aqk:A, 4axe:A, 6fjk:A, 6fl3:A, 6fl8:A, 2xal:A, 2xal:B, 2xam:A, 2xam:B, 2xan:B, 2xao:B, 2xar:A, 2xar:B
20 5g1n:E 307 34 0.1833 0.0358 0.3235 4.0 5g1n:A, 5g1n:B, 5g1n:C, 5g1n:D, 5g1n:F, 5g1p:A, 5g1p:B, 5g1p:C, 5g1p:D, 5g1p:E, 5g1p:F
21 6o7i:A 741 47 0.2000 0.0162 0.2553 4.3
22 6muu:A 780 47 0.2000 0.0154 0.2553 4.3 6iqw:A, 6mur:A, 6mus:A, 6mut:A, 6o7e:A, 6o7h:A
23 1jhd:A 396 25 0.1833 0.0278 0.4400 4.6
24 8qrk:O 194 17 0.1333 0.0412 0.4706 6.3 7a5f:O6, 7a5g:O6, 7a5i:O6, 7a5k:O6, 8any:AO, 8csp:O, 8csq:O, 8csr:O, 8css:O, 8cst:O, 8csu:O, 3j9m:AO, 3jd5:p, 8k2a:SS, 7l08:AO, 6neq:p, 6nf8:p, 6nu2:AO, 6nu3:AO, 7og4:AO, 8oir:AO, 8ois:AO, 7p2e:O, 7pnx:O, 7pny:O, 7pnz:O, 7po0:O, 7po1:O, 7po2:O, 7po3:O, 7qi4:AO, 7qi5:AO, 7qi6:AO, 8qrl:O, 8qrm:O, 8qrn:O, 6rw4:O, 6rw5:O, 6vlz:AO, 6vmi:AO, 8xt0:SS, 8xt2:SS, 6zm5:AO, 6zm6:AO, 6zs9:AO, 6zsa:AO, 6zsb:AO, 6zsc:AO, 6zsd:AO, 6zse:AO, 6zsg:AO
25 6pbc:A 1070 23 0.1833 0.0103 0.4783 6.5
26 7t8t:A 1086 23 0.1833 0.0101 0.4783 6.5
27 7z3j:A 1119 23 0.1833 0.0098 0.4783 6.5 2fci:A, 4k45:A, 7nxe:A, 2pld:A, 2ple:A, 5tq1:A, 5tqs:A, 5tqs:B, 5tqs:D, 5tqs:C, 1ywo:A
28 1r5t:A 141 19 0.1667 0.0709 0.5263 6.6 1r5t:B, 1r5t:C, 1r5t:D
29 7pnt:O 197 17 0.1333 0.0406 0.4706 7.0 7pnu:O, 7pnv:O, 7pnw:O
30 3e5z:A 290 21 0.1333 0.0276 0.3810 7.7 3e5z:B
31 7zm7:A 711 59 0.2833 0.0239 0.2881 7.9 7zmb:A, 7zmg:A
32 7t92:C 317 43 0.1833 0.0347 0.2558 8.8
33 6fl3:B 420 9 0.0833 0.0119 0.5556 9.8 4axc:A, 4axf:A, 6fjk:B, 6fl8:B, 6gfg:B, 6gfg:A, 6gfh:A, 6gfh:B, 4lv7:B, 3udt:A, 3udt:B, 3udz:A, 3udz:B, 2xan:A, 2xao:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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