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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
LLQYHYDCGDFGMQLLAYPTRGRTVHFKVLDEFGTRFEVANCSICMHWLNTGEDGGLIFSAGYEGCHVLVKDGRYVLRVQ
LEEMLLSGVVAASYEVQMTCPRP

The query sequence (length=103) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6gf7:A 105 103 1.0000 0.9810 1.0000 6.04e-75 6gf7:B
2 3e5z:A 290 25 0.1165 0.0414 0.4800 1.2 3e5z:B
3 7u5y:A 227 70 0.1845 0.0837 0.2714 1.7 7u5y:B, 7u5y:C, 7u5y:D, 7u5y:E, 7u5y:F
4 7qxb:P 251 50 0.1262 0.0518 0.2600 3.1 7qxs:P
5 7w12:A 490 38 0.1359 0.0286 0.3684 3.2
6 1l5j:A 862 35 0.1068 0.0128 0.3143 3.8 1l5j:B
7 8k9n:A 125 24 0.0874 0.0720 0.3750 4.3 8k9p:A, 3nyk:A, 2p80:D, 1paz:A, 3paz:A, 4paz:A, 5paz:A, 6paz:A, 7paz:A, 8paz:A, 1py0:A, 1pza:A, 1pzb:A, 4rh4:A, 5x31:A, 5x31:B
8 2h1i:A 212 22 0.0874 0.0425 0.4091 5.4 2h1i:B, 2h1i:C
9 5u6n:B 448 25 0.0874 0.0201 0.3600 5.7 5u6m:A, 5u6m:B, 5u6n:A, 5u6s:A, 5u6s:B, 5v2j:A, 5v2j:B, 5v2k:A, 5v2k:B
10 3j3v:C 277 52 0.2039 0.0758 0.4038 6.0 7aqc:C, 7aqd:C, 7as8:E, 7as9:E, 8buu:C, 6ha1:C, 6ha8:C, 6htq:C, 3j3w:C, 3j9w:BD, 5njt:W, 7o5b:Z, 7ope:E, 6ppf:C, 6ppk:C, 6pvk:C, 8qcq:C, 7qgu:C, 7qh4:C, 8qpp:Z, 7qv1:C, 7qv2:C, 7qv3:C, 8r55:Z, 8s1p:C, 8s1u:C, 7s9u:C, 7sae:C, 6tnn:W, 6tpq:W
11 6o8w:C 275 29 0.1359 0.0509 0.4828 6.1 7nhk:G, 6o8x:C, 6o8y:C, 6o8z:C, 6o90:C, 7p7q:G, 7p7r:G, 7p7s:G, 7p7t:G, 7p7u:G, 6w6p:C
12 1rpx:A 230 58 0.1553 0.0696 0.2759 6.2 1rpx:B, 1rpx:C
13 4rhm:A 308 26 0.1262 0.0422 0.5000 8.6 4rhl:A, 4rhl:B, 4rhm:B, 4rhm:C
14 6yxx:EN 638 75 0.2136 0.0345 0.2933 8.6 6yxy:EN

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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