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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
LKYTCLYVRSTIYKRCRHPGELRNGQVEIKTDLSFGSQIEFSCSEGFFLIGSTTSRCEVVGWSHPLPQCE

The query sequence (length=70) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8tgt:C 70 70 1.0000 1.0000 1.0000 3.46e-48
2 5hyp:A 125 95 0.9857 0.5520 0.7263 5.19e-38 5hyt:B, 5hyt:D, 5hyt:F, 5hyt:H
3 1ckl:A 126 72 0.3714 0.2063 0.3611 8.77e-06 1ckl:B, 1ckl:D, 1ckl:E, 1ckl:F, 2o39:C, 2o39:D
4 7nyc:C 809 43 0.2143 0.0185 0.3488 0.011 7nyd:C
5 2xwb:F 714 57 0.2429 0.0238 0.2982 0.11 3hrz:D, 3hs0:D, 3hs0:I, 7jtn:A, 7jtn:C, 7jtq:A, 7jtq:C, 7noz:F, 2ok5:A, 1q0p:A, 6qsw:AAA, 6qsw:BBB, 6qsw:CCC, 6qsx:AAA, 6qsx:BBB, 6rav:AAA, 6rav:BBB, 1rrk:A, 1rs0:A, 1rtk:A, 6rur:L, 6rur:J, 6ruv:J, 6ruv:L, 6t8u:AAA, 6t8u:BBB, 6t8u:CCC, 6t8v:AAA, 6t8v:BBB, 6t8w:AAA, 6t8w:BBB, 2win:I, 2win:J, 2win:K, 2win:L, 2xwb:H
6 8typ:A 310 35 0.1714 0.0387 0.3429 0.13 1elv:A, 8gmn:A, 8gmn:B, 8gmn:C, 8gmn:D
7 4a5w:B 871 32 0.1429 0.0115 0.3125 0.38
8 4e0s:B 898 32 0.1429 0.0111 0.3125 0.38 7nyc:B, 7nyd:B
9 3t5o:A 871 32 0.1429 0.0115 0.3125 0.38
10 2a9w:A 264 47 0.2286 0.0606 0.3404 0.65 2a9w:B, 2a9w:C, 2a9w:D, 1aiq:A, 1aiq:B, 1aob:A, 1axw:A, 1axw:B, 3b5b:A, 3b5b:B, 3b9h:A, 2bbq:A, 2bbq:B, 1bdu:A, 3bfi:A, 3bgx:A, 3bhl:A, 3bhl:B, 3bhr:A, 1bid:A, 1bjg:A, 1bq1:A, 1bq1:B, 6cdz:A, 6cdz:B, 1ddu:A, 1ddu:B, 1dna:A, 1dna:B, 1f4c:A, 1f4c:B, 1f4d:A, 1f4d:B, 1f4e:A, 1f4f:A, 1f4f:B, 1f4g:A, 1f4g:B, 2fto:X, 1fwm:A, 1fwm:B, 2g8x:A, 2g8x:B, 4gev:A, 4gev:B, 4isk:A, 4isk:B, 4isk:C, 4isk:F, 4isk:D, 4isk:E, 4isk:G, 4isk:H, 1jg0:A, 1jg0:B, 1jtq:A, 1jtq:B, 1jtu:A, 1jtu:B, 1jut:A, 1jut:B, 7jx1:A, 7jx1:B, 7jxf:A, 7jxf:B, 1kce:A, 1kce:B, 2kce:A, 2kce:B, 1kzi:A, 1kzi:B, 1kzj:A, 1kzj:B, 1kzj:C, 1kzj:D, 1kzj:E, 1kzj:F, 4lrr:A, 1nce:A, 1nce:B, 6nnr:A, 6nnr:B, 1syn:A, 1syn:B, 1tdu:A, 1tdu:B, 1tlc:A, 1tlc:B, 1tls:A, 1tls:B, 1trg:A, 1tsd:A, 1tsd:B, 1tsn:A, 2tsc:A, 2tsc:B, 1tys:A, 2vet:A, 2vf0:A, 2vf0:B, 1zpr:A, 1zpr:B
11 4c16:A 280 37 0.1714 0.0429 0.3243 0.78 4c16:B, 4csy:A, 4csy:B, 1esl:A, 6eyi:A, 6eyj:A, 6eyj:B, 6eyk:A, 1g1t:A
12 7yi2:D 321 41 0.1714 0.0374 0.2927 1.2 7yi0:D, 7yi3:D, 7yi4:D, 7yi5:D
13 4dq1:A 312 31 0.1714 0.0385 0.3871 1.9 4dq1:B
14 2je2:A 157 45 0.1857 0.0828 0.2889 2.3 8gar:A, 2je3:A
15 3n94:A 466 39 0.1714 0.0258 0.3077 4.4
16 5jej:A 234 58 0.2857 0.0855 0.3448 5.2 5jej:B, 5jek:A, 5jek:B, 5jel:A, 5jeo:A, 5jer:A, 5jer:C, 5jer:E, 5jer:G
17 4ont:D 126 59 0.2143 0.1190 0.2542 5.4 4ont:F, 4ont:E, 4zh1:D, 4zh1:E, 4zh1:F
18 8k5o:L 275 44 0.1857 0.0473 0.2955 6.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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