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BioLiP
>protein
LKSFPEVVGKTVDQAREYFTLHYPQYNVYFLPEGSPVTL

The query sequence (length=39) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1egp:A 39 39 1.0000 1.0000 1.0000 1.30e-23
2 1cir:A 39 35 0.3333 0.3333 0.3714 2.35e-04 1ciq:A, 1cq4:A
3 1hym:A 44 36 0.3077 0.2727 0.3333 0.29
4 1yht:A 344 34 0.2821 0.0320 0.3235 2.1
5 6r77:A 348 19 0.2308 0.0259 0.4737 3.0 6r77:B
6 4hrg:A 114 27 0.2564 0.0877 0.3704 3.1 1bt6:A, 1bt6:B, 4drw:A, 4drw:B, 4drw:C, 4drw:D, 4ftg:A, 4ftg:B, 4hre:E, 4hre:F, 4hre:I, 4hre:J, 4hrg:B, 4hrh:A, 4hrh:B
7 8jiw:BB 213 28 0.2821 0.0516 0.3929 3.4 8ip8:bb, 8ip9:bb, 8ipa:bb, 8ipb:bb, 8r6f:B, 4v7e:BB
8 6s3t:A 374 20 0.2051 0.0214 0.4000 3.7 6rux:A, 6rux:B, 6rux:C, 6s3t:B, 6s3t:S, 6s3t:T
9 6wmp:C 1196 14 0.2308 0.0075 0.6429 4.3 6wmr:C, 6wmt:C
10 1l0y:D 221 12 0.2308 0.0407 0.7500 4.7 1ha5:A, 1ha5:B, 1ha5:C, 1ha5:D, 1l0y:B, 1uup:A, 1uup:B, 1uup:C, 1uup:D
11 5fzo:A 339 29 0.2564 0.0295 0.3448 4.9 5fzo:B, 2ypd:A, 2ypd:B
12 4by9:F 366 27 0.2051 0.0219 0.2963 5.0 4by9:I, 4by9:C, 4by9:L, 3nmu:A, 3nmu:B, 3nvi:A, 3nvi:C, 3nvk:A, 3nvk:F
13 3hf7:A 127 11 0.1538 0.0472 0.5455 5.1
14 7pvn:B 990 19 0.2308 0.0091 0.4737 7.0 7sol:C
15 7sol:A 1011 19 0.2308 0.0089 0.4737 7.0 7pvn:A
16 5mdn:A 761 21 0.2308 0.0118 0.4286 7.2 5mdn:B
17 6n6a:A 181 24 0.1795 0.0387 0.2917 8.8 6n6c:A, 6n6d:A, 6n6e:A, 6n6f:A, 6n6g:A, 6n6h:A
18 2brr:Y 225 25 0.2308 0.0400 0.3600 9.4 2brr:H, 6f7t:H, 6f7t:B, 4hxb:H, 1uwx:H, 1uwx:M
19 7olc:SB 232 28 0.2564 0.0431 0.3571 9.7 7old:SB, 8oo0:SB, 5oql:l, 7r81:C2, 6rxt:Ca, 6rxu:Ca, 6rxv:Ca, 6rxx:Ca, 7z3n:SB, 7z3o:SB
20 1jv1:A 490 30 0.2564 0.0204 0.3333 9.8 1jv1:B, 1jv3:A, 1jv3:B, 1jvd:A, 1jvd:B, 1jvg:A, 1jvg:B, 6z2f:A, 6z2f:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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